Non-Coding RNA Search

Ss1.1-rill337b_f10.5

Sequence:


               
               AAGATACCAAGATACCACTTCCCTCCGGGGAAGCCCTAGTTTAGAGAGCACTTTACACTT
CGCTCAAGAGGAGGCATACAACCACAGCCCCAAACTGGGGCCCTCCAGACCTGGATCTGT
CAAGCCGGGCCTGCAAATGCAAGTCCTATATGAGTTTGAAGCTAGGAACTCACAGGAACT
GACTGTGGTCCAGGGAGAGGTGCTGGAGATTCTGGACCAGAGCAAGCGGTGGTGGCTGGT
GAAGAATGAGATGGGACGGAGCGGCTACATCCCCAGCAACATCCTGGAGCCCCTCCAGTC
GGGGGCTCCCAGGAGCCAGAACGGGTCGCCCTCTCGGGCTCCAATGCTTCGACTTAGCTC
CAGGCCTGAGGAGGTCACAGCGTGGCTGCAGGCAGAGAACTTCTCCACTGTCACCGTGAG
GACCCTCGGCTCCCTGACAGGGAGCCAGCTGCTTCACATGAGACCTGGGGAGCTACAGAT
GCTGTGTCCACGGGAGGCCCCACGGGTCCTGGCACGGCTGGAGGCCGTCAGAAGGATGCT
GGGGATAAGCCCTTAGGCACCAACTCAGACACCTCCAAGACCAAGGCTCTCTCACAAGCA
AGGCGGCGGATCTGAGATTCTTTAGGGCTCCGAGAGTTCCCCTTTCAGGTCCCCTGGCTG
CAGTGAACCCCATACCCCAGCTCACATGGCAAAGAGGATGATCAAGCCCATAGGATGAGA
CAGATGGTGCCCCTTCTCACTGTGTTGAGAGCTGCTCTCTCCAGTTAACACCTGTTTATT
GGATCTCTTTCCTGAGCCTGGAGCACTTATGCCCAGAGCTGTCAGGACTCTGTTTAATGC
CTCTCCTCCCCAATAAAATTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATACCAAGATACCACTTCCCTCCGGGGAAGCCCTAGTTTAGAGAGCACTTTACACTT
CGCTCAAGAGGAGGCATACAACCACAGCCCCAAACTGGGGCCCTCCAGACCTGGATCTGT
CAAGCCGGGCCTGCAAATGCAAGTCCTATATGAGTTTGAAGCTAGGAACTCACAGGAACT
GACTGTGGTCCAGGGAGAGGTGCTGGAGATTCTGGACCAGAGCAAGCGGTGGTGGCTGGT
GAAGAATGAGATGGGACGGAGCGGCTACATCCCCAGCAACATCCTGGAGCCCCTCCAGTC
GGGGGCTCCCAGGAGCCAGAACGGGTCGCCCTCTCGGGCTCCAATGCTTCGACTTAGCTC
CAGGCCTGAGGAGGTCACAGCGTGGCTGCAGGCAGAGAACTTCTCCACTGTCACCGTGAG
GACCCTCGGCTCCCTGACAGGGAGCCAGCTGCTTCACATGAGACCTGGGGAGCTACAGAT
GCTGTGTCCACGGGAGGCCCCACGGGTCCTGGCACGGCTGGAGGCCGTCAGAAGGATGCT
GGGGATAAGCCCTTAGGCACCAACTCAGACACCTCCAAGACCAAGGCTCTCTCACAAGCA
AGGCGGCGGATCTGAGATTCTTTAGGGCTCCGAGAGTTCCCCTTTCAGGTCCCCTGGCTG
CAGTGAACCCCATACCCCAGCTCACATGGCAAAGAGGATGATCAAGCCCATAGGATGAGA
CAGATGGTGCCCCTTCTCACTGTGTTGAGAGCTGCTCTCTCCAGTTAACACCTGTTTATT
GGATCTCTTTCCTGAGCCTGGAGCACTTATGCCCAGAGCTGTCAGGACTCTGTTTAATGC
CTCTCCTCCCCAATAAAATTATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828581|ref|XP_580758.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828581|ref|XP_580758.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               566-665, - strand, RNAz p=0.833729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               566-665, - strand, RNAz p=0.833729

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139053, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139053, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               27-208, gnl|bosTau2|chr3 (25663478-25663659)
               

               
               27-208, gnl|Hg17|chr1 (110006855-110006659)
               

               
               27-208, gnl|Mm7|chr3 (107709165-107709361)
               


               
               544-862, gnl|bosTau2|chr3 (25665019-25665334)
               

               
               544-862, gnl|canFam2|chr6 (45236629-45236278)
               

               
               544-862, gnl|dasNov1|scaffold_22814 (8610-8301)
               

               
               544-862, gnl|echTel1|scaffold_300741 (12850-12534)
               

               
               544-862, gnl|hg17|chr1 (110004624-110004973)
               

               
               544-862, gnl|Hg17|chr1 (110005067-110004756)
               

               
               544-862, gnl|loxAfr1|scaffold_46011 (5241-4884)
               

               
               544-862, gnl|mm7|chr3 (107711299-107710968)
               

               
               544-862, gnl|Mm7|chr3 (107710870-107711169)
               

               
               544-862, gnl|oryCun1|scaffold_201659 (41731-41403)
               

               
               544-862, gnl|panTro1|chr1 (112448672-112448323)
               

               
               544-862, gnl|rheMac2|chr1 (112808104-112808453)
               

               
               544-862, gnl|rn3|chr2 (203414989-203414668)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-208, gnl|bosTau2|chr3 (25663478-25663659)
               

               
               27-208, gnl|Hg17|chr1 (110006855-110006659)
               

               
               27-208, gnl|Mm7|chr3 (107709165-107709361)
               


               
               544-862, gnl|bosTau2|chr3 (25665019-25665334)
               

               
               544-862, gnl|canFam2|chr6 (45236629-45236278)
               

               
               544-862, gnl|dasNov1|scaffold_22814 (8610-8301)
               

               
               544-862, gnl|echTel1|scaffold_300741 (12850-12534)
               

               
               544-862, gnl|hg17|chr1 (110004624-110004973)
               

               
               544-862, gnl|Hg17|chr1 (110005067-110004756)
               

               
               544-862, gnl|loxAfr1|scaffold_46011 (5241-4884)
               

               
               544-862, gnl|mm7|chr3 (107711299-107710968)
               

               
               544-862, gnl|Mm7|chr3 (107710870-107711169)
               

               
               544-862, gnl|oryCun1|scaffold_201659 (41731-41403)
               

               
               544-862, gnl|panTro1|chr1 (112448672-112448323)
               

               
               544-862, gnl|rheMac2|chr1 (112808104-112808453)
               

               
               544-862, gnl|rn3|chr2 (203414989-203414668)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               jej (0.296765)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.296765)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)

	27-208, gnl\|bosTau2\|chr3 (25663478-25663659)
	27-208, gnl\|Hg17\|chr1 (110006855-110006659)
	27-208, gnl\|Mm7\|chr3 (107709165-107709361)

	544-862, gnl\|bosTau2\|chr3 (25665019-25665334)
	544-862, gnl\|canFam2\|chr6 (45236629-45236278)
	544-862, gnl\|dasNov1\|scaffold_22814 (8610-8301)
	544-862, gnl\|echTel1\|scaffold_300741 (12850-12534)
	544-862, gnl\|hg17\|chr1 (110004624-110004973)
	544-862, gnl\|Hg17\|chr1 (110005067-110004756)
	544-862, gnl\|loxAfr1\|scaffold_46011 (5241-4884)
	544-862, gnl\|mm7\|chr3 (107711299-107710968)
	544-862, gnl\|Mm7\|chr3 (107710870-107711169)
	544-862, gnl\|oryCun1\|scaffold_201659 (41731-41403)
	544-862, gnl\|panTro1\|chr1 (112448672-112448323)
	544-862, gnl\|rheMac2\|chr1 (112808104-112808453)
	544-862, gnl\|rn3\|chr2 (203414989-203414668)

	jej (0.296765)
	ill (0.175593)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)