Non-Coding RNA Search

Ss1.1-rill337b_h2.5

Sequence:


               
               ATCGGGAACGGCTGAGCTCGTGGCAGCCGGAGTCCGGAGAGTGGCGCGGCCATGAGCCCT
CTGCTGTACTACGCCCTGCCCGCCCTGGGCAGCTATGTCATGCTCTCCATCTTCTTCCTG
CGCCGACCCCGCCTGCTGCACACACCGTGGGCTCCAGCCTTCTATCCCCGCCTGGGAGCC
CACCGGGGAGGATCTGGAGAGCGCCTGGAGAACACCATGGAGGCCATGGAGAACTCCATG
GCCCAGAGAGCTGACCTCCTAGAGCTCGACTGCCAGCTGACCCGGGATGGCGTGGTGGTG
GTGTCACATGACAAGAACCTGTCCCGCCAGTCAGGCGTGAATAGGGATGTGAGCAGCCTG
GACTTTGAGGAGCTGCCCCTCTACAAGGAAGAGCTGGAGGTTTTCTTCTCACCAGGCCAC
TTCGCACACGGCTCAGACCGGCACATGGTCAGGCTGGAGGACCTGTTCCAGAGGTTCCCG
CGGATGCCCATGAGCGTGGAGGTCAAAGAGCAAAATGAAGAGCTTATTCGCAAGATAGCA
GGCCTGGTGAGGCACTTTGATCGCAGTGGAATCACCATCTGGGCCTCGGAGAAGAGCGCG
ATCATGAAGAAATGCAAGGCCGCTAACCCCGAGATGCCCATCTCCTTCACAATGAGCCGA
AGATTCTGGGTGCTGCTGCTCTATTACCTGGGGCTGCTGCCCTTCGTCCCCATCCCCGAG
AATTCCCAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGGAACGGCTGAGCTCGTGGCAGCCGGAGTCCGGAGAGTGGCGCGGCCATGAGCCCT
CTGCTGTACTACGCCCTGCCCGCCCTGGGCAGCTATGTCATGCTCTCCATCTTCTTCCTG
CGCCGACCCCGCCTGCTGCACACACCGTGGGCTCCAGCCTTCTATCCCCGCCTGGGAGCC
CACCGGGGAGGATCTGGAGAGCGCCTGGAGAACACCATGGAGGCCATGGAGAACTCCATG
GCCCAGAGAGCTGACCTCCTAGAGCTCGACTGCCAGCTGACCCGGGATGGCGTGGTGGTG
GTGTCACATGACAAGAACCTGTCCCGCCAGTCAGGCGTGAATAGGGATGTGAGCAGCCTG
GACTTTGAGGAGCTGCCCCTCTACAAGGAAGAGCTGGAGGTTTTCTTCTCACCAGGCCAC
TTCGCACACGGCTCAGACCGGCACATGGTCAGGCTGGAGGACCTGTTCCAGAGGTTCCCG
CGGATGCCCATGAGCGTGGAGGTCAAAGAGCAAAATGAAGAGCTTATTCGCAAGATAGCA
GGCCTGGTGAGGCACTTTGATCGCAGTGGAATCACCATCTGGGCCTCGGAGAAGAGCGCG
ATCATGAAGAAATGCAAGGCCGCTAACCCCGAGATGCCCATCTCCTTCACAATGAGCCGA
AGATTCTGGGTGCTGCTGCTCTATTACCTGGGGCTGCTGCCCTTCGTCCCCATCCCCGAG
AATTCCCAGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865868|ref|XP_610907.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865868|ref|XP_610907.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-191, gnl|bosTau2|chr25 (25135108-25135298)
               

               
               3-191, gnl|Hg17|chr16 (30032349-30032161)
               

               
               3-191, gnl|Mm7|chr7 (122862978-122863168)
               


               
               412-534, gnl|bosTau2|chr25 (25136365-25136487)
               

               
               412-534, gnl|Hg17|chr16 (30031250-30031128)
               

               
               412-534, gnl|Mm7|chr7 (122864121-122864243)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-191, gnl|bosTau2|chr25 (25135108-25135298)
               

               
               3-191, gnl|Hg17|chr16 (30032349-30032161)
               

               
               3-191, gnl|Mm7|chr7 (122862978-122863168)
               


               
               412-534, gnl|bosTau2|chr25 (25136365-25136487)
               

               
               412-534, gnl|Hg17|chr16 (30031250-30031128)
               

               
               412-534, gnl|Mm7|chr7 (122864121-122864243)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.351185)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)

	3-191, gnl\|bosTau2\|chr25 (25135108-25135298)
	3-191, gnl\|Hg17\|chr16 (30032349-30032161)
	3-191, gnl\|Mm7\|chr7 (122862978-122863168)

	412-534, gnl\|bosTau2\|chr25 (25136365-25136487)
	412-534, gnl\|Hg17\|chr16 (30031250-30031128)
	412-534, gnl\|Mm7\|chr7 (122864121-122864243)