Non-Coding RNA Search

Ss1.1-rill338b_f17.5

Sequence:


               
               TGTCCCTGCCTCGGACCGTGCGCTCCATGCGGCCGCCCACCATGTCCGGGCACTTTCTGC
TCGCGCCCATCCCCGAGTCCTCCTCGGACTACCTCCTGCCCAAGGACATCAAACTGGCCG
TGCTGGGCGCCGGCCGCGTGGGCAAGAGCGCAATGATCGTGCGCTTCCTGACCAAGAGAT
TCATTGGCGATTACGAACCGAATACAGGCAAGTTGTACTCTCGGCTTGTGTGCGTGGAGG
GAGACCAGCTCTCCTTGCAGATCCAGGACACTCCCGGGGGCATCCAGGTCCAAGACGGCC
TCACCCAGGCAGTGGACTCGCTGTCCAAGTGCGTGCAGTGGGCAGAGGGCTTCCTGCTGG
TCTATTCCATCACAGACTATGACAGCTACCTGTCCATCCGCCCCCTGTACCAGTACATCC
GGAAGGTCCATCCCGACTCGAAGGCCCCCATCGTCATCGTGGGCAACAAGGGGGACCTTC
TGCACGCCCGGCAGGTGCAGACGTGTGATGGTGTCCAACTGGCCAACGAGCTGGGCAGCC
TCTTCCTGGAAATTTCCACCAGTGAAAACTACGAAGACGTCTGTGATGTGTTTCAGCATC
TCTGCAAGGAAGTGAGCAAGCTGCACAGCCTCGCCGGGGAGAGGAGAAGAGCCTCCATCA
TCCCTCGGCCGCGCTCCCCCAACATGCAGGACCTGAAGAGGCGCTTCAAGCAGGTTCTGT
CCTCCAAGGCCAAAGCCCCCTCTGCCCTGGGGTAGACTCACATCCCAGGAACAAGGCTCC
TCTTGGTGACTCATTCATGCAGCTACAAAGACTGGGGGTCGCCCTTTTTAACCACCCATT
CAGAGTTTATTTTTATACAGACTGTTGGTTTTCAAGTGTATGTGTATTTCTGAAAATTCA
GTGATCGCCTAGAAGTTGGATAGTTTTTTTAATAACATTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCTGCCTCGGACCGTGCGCTCCATGCGGCCGCCCACCATGTCCGGGCACTTTCTGC
TCGCGCCCATCCCCGAGTCCTCCTCGGACTACCTCCTGCCCAAGGACATCAAACTGGCCG
TGCTGGGCGCCGGCCGCGTGGGCAAGAGCGCAATGATCGTGCGCTTCCTGACCAAGAGAT
TCATTGGCGATTACGAACCGAATACAGGCAAGTTGTACTCTCGGCTTGTGTGCGTGGAGG
GAGACCAGCTCTCCTTGCAGATCCAGGACACTCCCGGGGGCATCCAGGTCCAAGACGGCC
TCACCCAGGCAGTGGACTCGCTGTCCAAGTGCGTGCAGTGGGCAGAGGGCTTCCTGCTGG
TCTATTCCATCACAGACTATGACAGCTACCTGTCCATCCGCCCCCTGTACCAGTACATCC
GGAAGGTCCATCCCGACTCGAAGGCCCCCATCGTCATCGTGGGCAACAAGGGGGACCTTC
TGCACGCCCGGCAGGTGCAGACGTGTGATGGTGTCCAACTGGCCAACGAGCTGGGCAGCC
TCTTCCTGGAAATTTCCACCAGTGAAAACTACGAAGACGTCTGTGATGTGTTTCAGCATC
TCTGCAAGGAAGTGAGCAAGCTGCACAGCCTCGCCGGGGAGAGGAGAAGAGCCTCCATCA
TCCCTCGGCCGCGCTCCCCCAACATGCAGGACCTGAAGAGGCGCTTCAAGCAGGTTCTGT
CCTCCAAGGCCAAAGCCCCCTCTGCCCTGGGGTAGACTCACATCCCAGGAACAAGGCTCC
TCTTGGTGACTCATTCATGCAGCTACAAAGACTGGGGGTCGCCCTTTTTAACCACCCATT
CAGAGTTTATTTTTATACAGACTGTTGGTTTTCAAGTGTATGTGTATTTCTGAAAATTCA
GTGATCGCCTAGAAGTTGGATAGTTTTTTTAATAACATTTTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661637|emb|CAH73746.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661637|emb|CAH73746.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-150, gnl|bosTau2|chr12 (18179935-18179786)
               

               
               1-150, gnl|Hg17|chr13 (26742996-26743205)
               

               
               1-150, gnl|Mm7|chr5 (145739569-145739744)
               


               
               285-922, gnl|bosTau2|chr12 (18178205-18177544)
               

               
               285-922, gnl|Hg17|chr13 (26745159-26745799)
               

               
               285-922, gnl|Mm7|chr5 (145741408-145742059)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-150, gnl|bosTau2|chr12 (18179935-18179786)
               

               
               1-150, gnl|Hg17|chr13 (26742996-26743205)
               

               
               1-150, gnl|Mm7|chr5 (145739569-145739744)
               


               
               285-922, gnl|bosTau2|chr12 (18178205-18177544)
               

               
               285-922, gnl|Hg17|chr13 (26745159-26745799)
               

               
               285-922, gnl|Mm7|chr5 (145741408-145742059)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cga (0.279096)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cly (0.120642)

	1-150, gnl\|bosTau2\|chr12 (18179935-18179786)
	1-150, gnl\|Hg17\|chr13 (26742996-26743205)
	1-150, gnl\|Mm7\|chr5 (145739569-145739744)

	285-922, gnl\|bosTau2\|chr12 (18178205-18177544)
	285-922, gnl\|Hg17\|chr13 (26745159-26745799)
	285-922, gnl\|Mm7\|chr5 (145741408-145742059)

	cga (0.279096)
	ill (0.175593)
	cut (0.169924)
	cki (0.165235)
	csp (0.161186)
	cly (0.120642)