Non-Coding RNA Search

Ss1.1-rill339b_h7.5

Sequence:


               
               AATGTCAGACCTTAATAGACATTTGTTGTGTGCTCAGTACATAGCTGTTGGGTGAACACG
ATGACCACCTTAAAAGTGCCAGGACGAGCCGTGGAACACGATTTGATCTTGTAAAATTGA
ATCTTTTGGTCATGTATTTATCTCACTAGTCGTGACAACCAAATGGTTCTGCTACAGTTT
TTAGAAATAATTTTGAGACGTAATTATTTCCCATAGGAAGAAAGTGGAAGTTACTTTCAG
TTTTTATTTCTGAAAACTTTCGAAATACTCAAGCAGTATTCACGCTGCCTGCCACCTTGC
TGATGGTAGTGATACTAATTTATTTCTGCTGTACTTTTGCTAGTGGCTCAGAGTCTTTAT
TATACCATTTGAGTGAACTGAAAGGAATGGCTTCATGGAAGCAAAAATATGAGCCTCTTG
GACTCGATGCTGCAGGAATAGAAGATGCTATTACTGCAGTGGGTTCTTTCATACTCAAGG
CGAATGAACTTCTTCAAGTTATAGATAGCAGTATGAAAAACTTCAAAGCATTTTTTCGGT
GGCTTTATGTAGCAATGTTGAGAATGACAGAAGACCACGTACTTCCTGAGCTGAATAAGA
TGACTCAAAAAGATATCACATTTGTTGCTGAATTTCTTACTGAACATTTCAATGAGGCGC
CAGACCTTTATAATCGAAAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTCAGACCTTAATAGACATTTGTTGTGTGCTCAGTACATAGCTGTTGGGTGAACACG
ATGACCACCTTAAAAGTGCCAGGACGAGCCGTGGAACACGATTTGATCTTGTAAAATTGA
ATCTTTTGGTCATGTATTTATCTCACTAGTCGTGACAACCAAATGGTTCTGCTACAGTTT
TTAGAAATAATTTTGAGACGTAATTATTTCCCATAGGAAGAAAGTGGAAGTTACTTTCAG
TTTTTATTTCTGAAAACTTTCGAAATACTCAAGCAGTATTCACGCTGCCTGCCACCTTGC
TGATGGTAGTGATACTAATTTATTTCTGCTGTACTTTTGCTAGTGGCTCAGAGTCTTTAT
TATACCATTTGAGTGAACTGAAAGGAATGGCTTCATGGAAGCAAAAATATGAGCCTCTTG
GACTCGATGCTGCAGGAATAGAAGATGCTATTACTGCAGTGGGTTCTTTCATACTCAAGG
CGAATGAACTTCTTCAAGTTATAGATAGCAGTATGAAAAACTTCAAAGCATTTTTTCGGT
GGCTTTATGTAGCAATGTTGAGAATGACAGAAGACCACGTACTTCCTGAGCTGAATAAGA
TGACTCAAAAAGATATCACATTTGTTGCTGAATTTCTTACTGAACATTTCAATGAGGCGC
CAGACCTTTATAATCGAAAAGGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               161-280, - strand, RNAz p=0.973643

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, - strand, RNAz p=0.973643

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-450, gnl|bosTau2|chr6 (21631488-21631045)
               

               
               11-450, gnl|Hg17|chr4 (25074227-25074661)
               

               
               11-450, gnl|Mm7|chr5 (52223306-52223871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-450, gnl|bosTau2|chr6 (21631488-21631045)
               

               
               11-450, gnl|Hg17|chr4 (25074227-25074661)
               

               
               11-450, gnl|Mm7|chr5 (52223306-52223871)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               lin (0.145603)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               lin (0.145603)
               

               
               jca (0.11396)

	11-450, gnl\|bosTau2\|chr6 (21631488-21631045)
	11-450, gnl\|Hg17\|chr4 (25074227-25074661)
	11-450, gnl\|Mm7\|chr5 (52223306-52223871)

	hea (0.204499)
	nlu (0.191681)
	ill (0.175593)
	lin (0.145603)
	jca (0.11396)