Non-Coding RNA Search

Ss1.1-risp01_o16.5

Sequence:


               
               AGAATGGATTAAAGATAAGACCTTTTATGAAAGCACACCTAAATCGAGATAAAGACAAAG
AACTTTTAAAATTAACCCAGTACCTCAAGGAAATAGCAAAATTAGATGACTTTTTGGACC
TAAATCACAAATATTGGGAAAGGTATCTCTCAAAGAAGCAAGGACAGTAGTTACAAGTCA
TACTGGCAGTTATCGAAGATACTTGAGATCCATGAACTTCTCGCTTTTGTGCTAGAGATC
ATTATGATAGTGCTGGACACTGTAGCAAATACCAGACTGCTTATACTTGGTCTTCCAGTT
TTTTTGTAAATTTAATTTTATATTTTTTGAAGATCATAGCAATACATGGAAAAAGATCCC
TTTTTCTCCCTCTCTGAATATACTGTAACTCTGGAAAAATAGGTTCTCCAGCATGGAGTA
CAAACACAAAAAGTGGACAAAAATGTATACTTTACAATGTCATTTTGTGACTTTGGAAAC
AAGTATGTCATGTGTTTTTGTCTCATTGTGTTGTCTAAGCCCAAACCCATCTTGAAACTA
CAGTTTTTCTCTTTAAAAAAGGTTTTTAGTAAGGAACCTAGTTTGGTGTGCTTAACATCA
CTGAGAGTTTTTTTTTAATTCCATTGTCATAAACACAATTTCTCTTCTTACTCCAACATT
TACATCTCTAAATTCTGAGCTATCTCAGTTTGGTCTATATGTGTGTCAGTGTTCTTTGAG
TAAAACTGGAAAACGTCTGCTGTGATACAGATGTGTCATAGTATGACAAATAGAAAACAC
AGGACTGAAGAATAAAAATAAGGAACAAGAGTTTGTTTCTTTGTAGTGGCTAAGTAGAAG
CACTCCTGCCTGAAACCCTTGTCCTAAAGGCAGTTTGAGGCAGTATGTTTTACGATGGGA
CATATCACTCGTTCAGCCCTAAAAAGCATGGACAACAAGTTTTTGTTCTGTTCTAGCTCT
AACTTGTCTAAGTGCAAACACTGTTTCAGTAAAAAATATCTAGCCATAAGATTAAAAAAA
AATTATTTGCATTGCTTATGCCTGCAGATAGGTAATGTGACCACTGTTTTGTGTTTACAG
TATTGCTTTATACAGTTCTTGTATTTGAAAGGAATCTGATCCTTTCAAATAAACTTGGTG
TATATTGTTCTTACGGGACTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATGGATTAAAGATAAGACCTTTTATGAAAGCACACCTAAATCGAGATAAAGACAAAG
AACTTTTAAAATTAACCCAGTACCTCAAGGAAATAGCAAAATTAGATGACTTTTTGGACC
TAAATCACAAATATTGGGAAAGGTATCTCTCAAAGAAGCAAGGACAGTAGTTACAAGTCA
TACTGGCAGTTATCGAAGATACTTGAGATCCATGAACTTCTCGCTTTTGTGCTAGAGATC
ATTATGATAGTGCTGGACACTGTAGCAAATACCAGACTGCTTATACTTGGTCTTCCAGTT
TTTTTGTAAATTTAATTTTATATTTTTTGAAGATCATAGCAATACATGGAAAAAGATCCC
TTTTTCTCCCTCTCTGAATATACTGTAACTCTGGAAAAATAGGTTCTCCAGCATGGAGTA
CAAACACAAAAAGTGGACAAAAATGTATACTTTACAATGTCATTTTGTGACTTTGGAAAC
AAGTATGTCATGTGTTTTTGTCTCATTGTGTTGTCTAAGCCCAAACCCATCTTGAAACTA
CAGTTTTTCTCTTTAAAAAAGGTTTTTAGTAAGGAACCTAGTTTGGTGTGCTTAACATCA
CTGAGAGTTTTTTTTTAATTCCATTGTCATAAACACAATTTCTCTTCTTACTCCAACATT
TACATCTCTAAATTCTGAGCTATCTCAGTTTGGTCTATATGTGTGTCAGTGTTCTTTGAG
TAAAACTGGAAAACGTCTGCTGTGATACAGATGTGTCATAGTATGACAAATAGAAAACAC
AGGACTGAAGAATAAAAATAAGGAACAAGAGTTTGTTTCTTTGTAGTGGCTAAGTAGAAG
CACTCCTGCCTGAAACCCTTGTCCTAAAGGCAGTTTGAGGCAGTATGTTTTACGATGGGA
CATATCACTCGTTCAGCCCTAAAAAGCATGGACAACAAGTTTTTGTTCTGTTCTAGCTCT
AACTTGTCTAAGTGCAAACACTGTTTCAGTAAAAAATATCTAGCCATAAGATTAAAAAAA
AATTATTTGCATTGCTTATGCCTGCAGATAGGTAATGTGACCACTGTTTTGTGTTTACAG
TATTGCTTTATACAGTTCTTGTATTTGAAAGGAATCTGATCCTTTCAAATAAACTTGGTG
TATATTGTTCTTACGGGACTATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12805519|gb|AAH02236.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12805519|gb|AAH02236.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               148-482, gnl|bosTau2|chr19 (18697158-18697493)
               

               
               148-482, gnl|Hg17|chr17 (3113706-3113395)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-482, gnl|bosTau2|chr19 (18697158-18697493)
               

               
               148-482, gnl|Hg17|chr17 (3113706-3113395)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               fty (0.351679)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	148-482, gnl\|bosTau2\|chr19 (18697158-18697493)
	148-482, gnl\|Hg17\|chr17 (3113706-3113395)

	fty (0.351679)
	ova (0.258264)
	ret (0.257467)
	thg (0.253582)
	spc (0.226732)
	tes (0.207814)
	fbs (0.175346)
	eli (0.151814)
	isp (0.150376)
	liv (0.146284)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)