Non-Coding RNA Search

Ss1.1-risp02_a14.5

Sequence:


               
               TTAAGATTTAATTCTGTATTTCAGTGCTGTTTCTTTTCCTATACATGCCTGAGTAAAGGA
CTTCGAAAGGAATCCCATGAGAAAATCATAAAGCTTGAGACAAAGTCTGACTGTAAAGTA
ACAGGGATTCCACCCAGGGGCTGACCAGTTGATGCTTTTGGTTTAGCAGGTGATCCCCTC
CTGCCTGCCTCAGGCCCCTCAAAATACTTCCTATCACAAAATTTTACTCTCAGAGAAGGA
ACTGACATCAGTCATTTAACTTATAGTGTAAATGTAAATCATGTTGTTGTTTCTCCTAGA
AGCATTTGCATTTTGGTCCCCTATTAAAGGAATTGCAACTCTTACCCTCACTCTAAAAAC
TACACCAAGATGACTGAAGGCAAACTTGACTTTCATGTAGGCCCTCAGAAGAACACCAAA
TGAAACCATGTCTGTAAAGATCATTAACTTAAAGCATATACAGCCTAAAGGTTATGCAAC
CAATAACAATAATTTAATTTCTTCTGCTTTTGTTTGTTTCTTTTTGTGGCTGCCCGTCTC
ATGTGGAAGTTCCCAGGTGAGGGATCAAATGAGCACCACAGCAGTGGCTACAGCAGCAAC
CCCAGCCACTGCAGTGACAATGCCAGATCCTTAACCTGCTGCTCTACAAGAATGAAGGAA
ACATTTGTAATTCTTCGATTTGGCAATAGCAGAATTAATGGATTCTCCTGATGGTAAATG
CTATTGTTTACCATTTCACATCAATCTTGATTTCTTAATTAAAAACCTAACACATTCATT
TCATATAGAAATCTTAAGATAATATGTGCCTGTTCTATTATATATGTTTAAATTTCACCT
GTTCCAAAGTAGCTTTGCAAATTAGACTATATCTACTCCATATCATTTTTCTCATATGTT
TGCCAAGTTTGGGAGTAAGGGAATGATTGTAGTAAATGGCATATATTTTCCTTTCTTATA
ATTTATCATTTTATTCTTTGATAGTTCATTTGTTTTGGAGGAGAAGGGCCTAACAATTAT
GGGTTATCTGCAAATGGATTTTGAAAAATAAAACAAACTATTTAAATGGTTAAACATGAG
ATCTATTGACACCATAATTGGGTTTTCATGAATCCCATCCTCTCCTAACTTGTGTAGATA
GGTTATTGTTAGAGTTAGAATATTTATATTTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGATTTAATTCTGTATTTCAGTGCTGTTTCTTTTCCTATACATGCCTGAGTAAAGGA
CTTCGAAAGGAATCCCATGAGAAAATCATAAAGCTTGAGACAAAGTCTGACTGTAAAGTA
ACAGGGATTCCACCCAGGGGCTGACCAGTTGATGCTTTTGGTTTAGCAGGTGATCCCCTC
CTGCCTGCCTCAGGCCCCTCAAAATACTTCCTATCACAAAATTTTACTCTCAGAGAAGGA
ACTGACATCAGTCATTTAACTTATAGTGTAAATGTAAATCATGTTGTTGTTTCTCCTAGA
AGCATTTGCATTTTGGTCCCCTATTAAAGGAATTGCAACTCTTACCCTCACTCTAAAAAC
TACACCAAGATGACTGAAGGCAAACTTGACTTTCATGTAGGCCCTCAGAAGAACACCAAA
TGAAACCATGTCTGTAAAGATCATTAACTTAAAGCATATACAGCCTAAAGGTTATGCAAC
CAATAACAATAATTTAATTTCTTCTGCTTTTGTTTGTTTCTTTTTGTGGCTGCCCGTCTC
ATGTGGAAGTTCCCAGGTGAGGGATCAAATGAGCACCACAGCAGTGGCTACAGCAGCAAC
CCCAGCCACTGCAGTGACAATGCCAGATCCTTAACCTGCTGCTCTACAAGAATGAAGGAA
ACATTTGTAATTCTTCGATTTGGCAATAGCAGAATTAATGGATTCTCCTGATGGTAAATG
CTATTGTTTACCATTTCACATCAATCTTGATTTCTTAATTAAAAACCTAACACATTCATT
TCATATAGAAATCTTAAGATAATATGTGCCTGTTCTATTATATATGTTTAAATTTCACCT
GTTCCAAAGTAGCTTTGCAAATTAGACTATATCTACTCCATATCATTTTTCTCATATGTT
TGCCAAGTTTGGGAGTAAGGGAATGATTGTAGTAAATGGCATATATTTTCCTTTCTTATA
ATTTATCATTTTATTCTTTGATAGTTCATTTGTTTTGGAGGAGAAGGGCCTAACAATTAT
GGGTTATCTGCAAATGGATTTTGAAAAATAAAACAAACTATTTAAATGGTTAAACATGAG
ATCTATTGACACCATAATTGGGTTTTCATGAATCCCATCCTCTCCTAACTTGTGTAGATA
GGTTATTGTTAGAGTTAGAATATTTATATTTAAAAT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               3-511, gnl|bosTau2|chr23 (5197629-5198158)
               

               
               3-511, gnl|Hg17|chr6 (53623862-53623334)
               


               
               649-1176, gnl|bosTau2|chr23 (5198168-5198688)
               

               
               649-1176, gnl|Hg17|chr6 (53623325-53622803)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-511, gnl|bosTau2|chr23 (5197629-5198158)
               

               
               3-511, gnl|Hg17|chr6 (53623862-53623334)
               


               
               649-1176, gnl|bosTau2|chr23 (5198168-5198688)
               

               
               649-1176, gnl|Hg17|chr6 (53623325-53622803)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               bfe (0.899146)
               

               
               vin (0.665115)
               

               
               isp (0.601504)
               

               
               ldo (0.291008)
               

               
               nep (0.183925)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.899146)
               

               
               vin (0.665115)
               

               
               isp (0.601504)
               

               
               ldo (0.291008)
               

               
               nep (0.183925)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

	3-511, gnl\|bosTau2\|chr23 (5197629-5198158)
	3-511, gnl\|Hg17\|chr6 (53623862-53623334)

	649-1176, gnl\|bosTau2\|chr23 (5198168-5198688)
	649-1176, gnl\|Hg17\|chr6 (53623325-53622803)

	bfe (0.899146)
	vin (0.665115)
	isp (0.601504)
	ldo (0.291008)
	nep (0.183925)
	tbr (0.154178)
	ste (0.135208)
	lyg (0.133103)