Non-Coding RNA Search

Ss1.1-risp02_m24.5

Sequence:


               
               CCTGTTTATGCATTGAAACAAATTTATGAAGTTAACAGTATACTTTGATACAACTGGTTA
TAAATCTCTAGGATCAATCTTTAAAACTTTTAGGTAACGTGCAAGCAGTCTTATGCAGAA
ATGGGAAAGGCTTTTGTCTAACGAAAGAACATACTACACGAAACATAGACGAAAGAAGAA
GAGTGCTTCAAAATGGAGCAATGATTAGTTCTAATGAACCATACGGGCTCCTAGAAGGGC
AAGTAAAAACCACTCGAGGACTTGGATTTCATGGAAATCTCAAACTGAAAAAATTCATTA
TTCCAGCACCTCAAACTATTTCTGTCCCTATAGATGACTTATGTCAATTCCTTATCTTAG
CTACCAATGGACTCTGGGAAGTTCTGGATACAAAGGAAGTAACTGCACTGACAATGACAG
CTTTTCAAGCATATAAAGAAACAGAGAGCATTAACACAGGAAACAAACTCTCACCATCCA
AAGGGCCTCTGCTTCTCCCAGTTAATGAATCAAGCACATCTAAATCAGAAACTAACATCC
ACATAGTGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTTTATGCATTGAAACAAATTTATGAAGTTAACAGTATACTTTGATACAACTGGTTA
TAAATCTCTAGGATCAATCTTTAAAACTTTTAGGTAACGTGCAAGCAGTCTTATGCAGAA
ATGGGAAAGGCTTTTGTCTAACGAAAGAACATACTACACGAAACATAGACGAAAGAAGAA
GAGTGCTTCAAAATGGAGCAATGATTAGTTCTAATGAACCATACGGGCTCCTAGAAGGGC
AAGTAAAAACCACTCGAGGACTTGGATTTCATGGAAATCTCAAACTGAAAAAATTCATTA
TTCCAGCACCTCAAACTATTTCTGTCCCTATAGATGACTTATGTCAATTCCTTATCTTAG
CTACCAATGGACTCTGGGAAGTTCTGGATACAAAGGAAGTAACTGCACTGACAATGACAG
CTTTTCAAGCATATAAAGAAACAGAGAGCATTAACACAGGAAACAAACTCTCACCATCCA
AAGGGCCTCTGCTTCTCCCAGTTAATGAATCAAGCACATCTAAATCAGAAACTAACATCC
ACATAGTGTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61851219|ref|XP_605053.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61851219|ref|XP_605053.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-550, gnl|bosTau2|chr29 (44929980-44930527)
               

               
               2-550, gnl|Hg17|chr3 (20002783-20002225)
               

               
               2-550, gnl|Mm7|chr17 (51658418-51657888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-550, gnl|bosTau2|chr29 (44929980-44930527)
               

               
               2-550, gnl|Hg17|chr3 (20002783-20002225)
               

               
               2-550, gnl|Mm7|chr17 (51658418-51657888)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fco (0.157208)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	2-550, gnl\|bosTau2\|chr29 (44929980-44930527)
	2-550, gnl\|Hg17\|chr3 (20002783-20002225)
	2-550, gnl\|Mm7\|chr17 (51658418-51657888)

	fco (0.157208)
	isp (0.150376)
	lin (0.145603)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)