Non-Coding RNA Search

Ss1.1-risp03_l12.5

Sequence:


               
               TTTCAAAATGCCAACTGTTCATTTTCTTAATAATGTTAGGTACCTAATTATCTAGAGGTG
TCTGAGATCTGTGTTAATCTGTTACTCCTCGGGGTTCAAAGTGATAAAGTAAAAATTTTC
TAGTAAAGCTTCCCTAGACTTCTCTAGATAATGTTCCTATTTGACCAGATAAGCGAAGGT
TGCGTTTTAAAAATATTTGAGATAAAATAACTTGGTTTTTTCAGCCACATGAGTTGATTC
TTCCAAATCTGAGATTTCTAAATTTATTATCCCTGACCAGGGTACTTGAATTCTTGCATT
TGTCTCCTTATACACATCTCCCACAATACATCACCAAAGACAAAGATAAGCTTCTGGCCC
AGTTTTTGCTTAAAAATTCCAAAGCACTCAGAGCACTTTAAGTCTGGTCTTGAAAGGAGT
TGTTTATAAAATCAAAGGGCTACCGATTCCCTGTTCACCCTGCACTGAAGCATATGATGA
CAATTTCAAACCTTCCTTTTTGGTTCATTAATTAGAACAGAGAATTTCATTGCTTAAGTG
TGTAACTCTACAGTGATTAGCAGTACTTGTTTTTATCGTTTCATCTGGGTGGTCATTAAT
TTTGAAACTCTTACCACTCATAATAGCTGGTAGTTGTTTTATGAAAGATGTAATTTATAG
CTAAAGTGGCTTTTTTATGCATAGCTGCCTTTTTTATTGTTTCACAATGTTTCTCAGCTA
TATAATCAGTTTCAAACTGGTTGTAAAAGTATAGCTGCAGCCAATGAATGTATTTATTTG
TTGTTTCACTAAATTGTAACAGAAACACTACTGTTAAAAATAAAAGTCTTTGTGCTTTTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAAATGCCAACTGTTCATTTTCTTAATAATGTTAGGTACCTAATTATCTAGAGGTG
TCTGAGATCTGTGTTAATCTGTTACTCCTCGGGGTTCAAAGTGATAAAGTAAAAATTTTC
TAGTAAAGCTTCCCTAGACTTCTCTAGATAATGTTCCTATTTGACCAGATAAGCGAAGGT
TGCGTTTTAAAAATATTTGAGATAAAATAACTTGGTTTTTTCAGCCACATGAGTTGATTC
TTCCAAATCTGAGATTTCTAAATTTATTATCCCTGACCAGGGTACTTGAATTCTTGCATT
TGTCTCCTTATACACATCTCCCACAATACATCACCAAAGACAAAGATAAGCTTCTGGCCC
AGTTTTTGCTTAAAAATTCCAAAGCACTCAGAGCACTTTAAGTCTGGTCTTGAAAGGAGT
TGTTTATAAAATCAAAGGGCTACCGATTCCCTGTTCACCCTGCACTGAAGCATATGATGA
CAATTTCAAACCTTCCTTTTTGGTTCATTAATTAGAACAGAGAATTTCATTGCTTAAGTG
TGTAACTCTACAGTGATTAGCAGTACTTGTTTTTATCGTTTCATCTGGGTGGTCATTAAT
TTTGAAACTCTTACCACTCATAATAGCTGGTAGTTGTTTTATGAAAGATGTAATTTATAG
CTAAAGTGGCTTTTTTATGCATAGCTGCCTTTTTTATTGTTTCACAATGTTTCTCAGCTA
TATAATCAGTTTCAAACTGGTTGTAAAAGTATAGCTGCAGCCAATGAATGTATTTATTTG
TTGTTTCACTAAATTGTAACAGAAACACTACTGTTAAAAATAAAAGTCTTTGTGCTTTTA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               647-804, + strand, RNAz p=0.892753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               647-804, + strand, RNAz p=0.892753

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr10 (7923121-7922286)
               

               
               1-840, gnl|Hg17|chr14 (52173361-52174181)
               

               
               1-840, gnl|Mm7|chr14 (40600077-40600969)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr10 (7923121-7922286)
               

               
               1-840, gnl|Hg17|chr14 (52173361-52174181)
               

               
               1-840, gnl|Mm7|chr14 (40600077-40600969)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-840, gnl\|bosTau2\|chr10 (7923121-7922286)
	1-840, gnl\|Hg17\|chr14 (52173361-52174181)
	1-840, gnl\|Mm7\|chr14 (40600077-40600969)

	mgp (0.230681)
	ece (0.229305)
	fbs (0.175346)
	isp (0.150376)
	ebs (0.118301)
	spc (0.113366)