Non-Coding RNA Search

Ss1.1-risp05_d21.5

Sequence:


               
               TTGGCAACTGATCCACATGTACGGTTTTGTTGAACCATATCCTGACAACAAGGATGACAC
AGCTGATATTCAGATGGTGACAGTTCGTGAAGCAGCATTACAAGGAACCAAAATTGAAGC
TGAACGGCTCCTACTGTATGAACGCTGGGATTTCTTATGCAAACTGGAGATGGTAGGGGA
AGATGGAGCCTTTGTGATTGGGCGGGATGAAGTGCTGACCGAAGATGAACTGACCACCAC
ACTCAAGGTACTGTGCATGCCTGCTGAGGAGTTCAGAGAGTTTAAAGACCAGGATGGATG
GGGAGATGATAAAAGGGAAGAAGACAGTCTGACAATCACAAACATTCCCAAACTCAGAGC
ATCATGGAGACAGCTTCTTCGGAACAGTGTTTTGTTAACCCTGCAATCCTATGCCACAGA
CTTGAAAAGTGAGCAAGACTTAATCAGTAATAAAGAGGTCTACGCCAAACTAAGCTGGAG
GGAACAGCAAGCCTTACAGGTTCGTTATGGTCAGAAGATGATCTTACACCAGTTGTTGGA
ACTGACAAGTTAGCAGCTTTGCTGTTGCCTGAAGAAGCATCCAGAAGAACTTTATAATCT
AAGCTGATACTCAGAAGAAAAATTAGGGCCTTTTGCTTTGCTTTTTGTATTAAATGCCAA
AAGGAAAAGTAGCAAAGTTGTTGTCTGGGAAGAACTCCAAGGTAAGAGTGATGTGCTTAA
GGGTCGGGAGCAGTAGACGTAGGAATCACTGTCTGTTGTTACTAAGACTACTAATAAGTT
TTATAGCTGTTTTATTCTCAGTTTGAACAGTGATGGGTTTTGTTGTTGTCTAGTATTTAA
CAACATGGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGCAACTGATCCACATGTACGGTTTTGTTGAACCATATCCTGACAACAAGGATGACAC
AGCTGATATTCAGATGGTGACAGTTCGTGAAGCAGCATTACAAGGAACCAAAATTGAAGC
TGAACGGCTCCTACTGTATGAACGCTGGGATTTCTTATGCAAACTGGAGATGGTAGGGGA
AGATGGAGCCTTTGTGATTGGGCGGGATGAAGTGCTGACCGAAGATGAACTGACCACCAC
ACTCAAGGTACTGTGCATGCCTGCTGAGGAGTTCAGAGAGTTTAAAGACCAGGATGGATG
GGGAGATGATAAAAGGGAAGAAGACAGTCTGACAATCACAAACATTCCCAAACTCAGAGC
ATCATGGAGACAGCTTCTTCGGAACAGTGTTTTGTTAACCCTGCAATCCTATGCCACAGA
CTTGAAAAGTGAGCAAGACTTAATCAGTAATAAAGAGGTCTACGCCAAACTAAGCTGGAG
GGAACAGCAAGCCTTACAGGTTCGTTATGGTCAGAAGATGATCTTACACCAGTTGTTGGA
ACTGACAAGTTAGCAGCTTTGCTGTTGCCTGAAGAAGCATCCAGAAGAACTTTATAATCT
AAGCTGATACTCAGAAGAAAAATTAGGGCCTTTTGCTTTGCTTTTTGTATTAAATGCCAA
AAGGAAAAGTAGCAAAGTTGTTGTCTGGGAAGAACTCCAAGGTAAGAGTGATGTGCTTAA
GGGTCGGGAGCAGTAGACGTAGGAATCACTGTCTGTTGTTACTAAGACTACTAATAAGTT
TTATAGCTGTTTTATTCTCAGTTTGAACAGTGATGGGTTTTGTTGTTGTCTAGTATTTAA
CAACATGGGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53132675|emb|CAG31926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53132675|emb|CAG31926.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-521, - strand, RNAz p=0.533351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-521, - strand, RNAz p=0.533351

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-105, gnl|bosTau2|chr18 (23200739-23200842)
               

               
               2-105, gnl|Hg17|chr16 (57109534-57109637)
               

               
               2-105, gnl|Mm7|chr8 (94306953-94307056)
               


               
               243-808, gnl|bosTau2|chr18 (23201252-23201826)
               

               
               243-808, gnl|Hg17|chr16 (57110124-57110686)
               

               
               243-808, gnl|Mm7|chr8 (94307425-94307923)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-105, gnl|bosTau2|chr18 (23200739-23200842)
               

               
               2-105, gnl|Hg17|chr16 (57109534-57109637)
               

               
               2-105, gnl|Mm7|chr8 (94306953-94307056)
               


               
               243-808, gnl|bosTau2|chr18 (23201252-23201826)
               

               
               243-808, gnl|Hg17|chr16 (57110124-57110686)
               

               
               243-808, gnl|Mm7|chr8 (94307425-94307923)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               isp (0.150376)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               isp (0.150376)
               

               
               pty (0.142714)

	2-105, gnl\|bosTau2\|chr18 (23200739-23200842)
	2-105, gnl\|Hg17\|chr16 (57109534-57109637)
	2-105, gnl\|Mm7\|chr8 (94306953-94307056)

	243-808, gnl\|bosTau2\|chr18 (23201252-23201826)
	243-808, gnl\|Hg17\|chr16 (57110124-57110686)
	243-808, gnl\|Mm7\|chr8 (94307425-94307923)