Non-Coding RNA Search

Ss1.1-risp05_l11.5

Sequence:


               
               GGAGAACCTCGATTGCTCCTGTGACCCTTCAATTTTGCCAATTGTGGATTTTCAGACACA
GTTGAATCTGACCATGGCAGAAGAGAAGGTCATTAAGCGAGGCACTTTACCCTATGGAAG
ACCCAGAGTTCTGCAGAAGAATAGCACCGTCTGTCTGCTTTACCAACACCAGTTTGTGAG
TGGTTACAGCCATGACCTCTTGATGCCCCTTTGGACATCCTACACCGTGGACAGAAATGA
CAGTTTCTCTGCAGAAGACTTTTCCAACTGTCTTTACCAGGATCTCCGAATTCCTCTTAG
TCCCATCCACAAATGCTCATTTTATAAAAATAATGCTAAACTGAGTTATGGGTTCCTCTC
CCCACCACAATTAAATAAAGGTTCAAGTCAAGTATATTCTGAAGCATTACTCACCACTAA
TATGGTACCCATGTACCAGAGTTTTCAAGTTATATGGCACTACTTGCATGGCACCCTCCT
GCAGAGGTATGCTGAAGAAAGAAATGGCATCAATGTTGTCAGCGGTCCCGTGTTTGACTC
TGATTATGATGGACGTTATGATTCCTTGGAAACTCTGAAGCAAAACAGCAGAACCATCCG
TAATCAAGAAATCCTGATTCCGACTCACTTCTTCATTGTGCTAACAAGTTGTAAAAACAC
ATCCCAGATTCCCTCACAGTGTGAAAATCTAGATACCTTGGCTTTCATTTTGCCTCACAG
GACAGATAATAGTGAGAGCTGTGCGCATGGGAAGCATGAATCCTCATGGGTTGAAGAGTT
GTTGAGGCTACACAGAGCTCGGATCACAGATGTAGAACACATCACTGGACTCAGCTTCTA
TCAAGAAAGAAAAGAGCCAATTTCAGACATTTTAAAGTTGAAAACACAGTTGCCACCCTT
TAACCAAGAAGACTGATATTTTTTTATTTGAAAAACACACCGTAAATCTTTTTGAAAGAA
CCTTCTGTTTTATACATCCTCTGTTCATGCTGTTGCATTGTTTGGAGACTGCCGACCAGA
GTTAGAACTGGGAATCCTCTGTGATACACGACCATCTCAGGGAAACTTGTGGCCTCAGCA
AAGCAGTAGGAAAGTGTTCCTATTGAGTCTTGCACATGTTTGAATGTGTAAGAATTGTTC
AAATTTGGGAATAAAGACAGACCATACCTAAAACTGCTCTTCTACTTCTCTTAAGGGCAG
AAGTGAATGTTGTCTGGTCACCAGATGTTCAAGTCTTATTATCATTAATAAATTTCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAACCTCGATTGCTCCTGTGACCCTTCAATTTTGCCAATTGTGGATTTTCAGACACA
GTTGAATCTGACCATGGCAGAAGAGAAGGTCATTAAGCGAGGCACTTTACCCTATGGAAG
ACCCAGAGTTCTGCAGAAGAATAGCACCGTCTGTCTGCTTTACCAACACCAGTTTGTGAG
TGGTTACAGCCATGACCTCTTGATGCCCCTTTGGACATCCTACACCGTGGACAGAAATGA
CAGTTTCTCTGCAGAAGACTTTTCCAACTGTCTTTACCAGGATCTCCGAATTCCTCTTAG
TCCCATCCACAAATGCTCATTTTATAAAAATAATGCTAAACTGAGTTATGGGTTCCTCTC
CCCACCACAATTAAATAAAGGTTCAAGTCAAGTATATTCTGAAGCATTACTCACCACTAA
TATGGTACCCATGTACCAGAGTTTTCAAGTTATATGGCACTACTTGCATGGCACCCTCCT
GCAGAGGTATGCTGAAGAAAGAAATGGCATCAATGTTGTCAGCGGTCCCGTGTTTGACTC
TGATTATGATGGACGTTATGATTCCTTGGAAACTCTGAAGCAAAACAGCAGAACCATCCG
TAATCAAGAAATCCTGATTCCGACTCACTTCTTCATTGTGCTAACAAGTTGTAAAAACAC
ATCCCAGATTCCCTCACAGTGTGAAAATCTAGATACCTTGGCTTTCATTTTGCCTCACAG
GACAGATAATAGTGAGAGCTGTGCGCATGGGAAGCATGAATCCTCATGGGTTGAAGAGTT
GTTGAGGCTACACAGAGCTCGGATCACAGATGTAGAACACATCACTGGACTCAGCTTCTA
TCAAGAAAGAAAAGAGCCAATTTCAGACATTTTAAAGTTGAAAACACAGTTGCCACCCTT
TAACCAAGAAGACTGATATTTTTTTATTTGAAAAACACACCGTAAATCTTTTTGAAAGAA
CCTTCTGTTTTATACATCCTCTGTTCATGCTGTTGCATTGTTTGGAGACTGCCGACCAGA
GTTAGAACTGGGAATCCTCTGTGATACACGACCATCTCAGGGAAACTTGTGGCCTCAGCA
AAGCAGTAGGAAAGTGTTCCTATTGAGTCTTGCACATGTTTGAATGTGTAAGAATTGTTC
AAATTTGGGAATAAAGACAGACCATACCTAAAACTGCTCTTCTACTTCTCTTAAGGGCAG
AAGTGAATGTTGTCTGGTCACCAGATGTTCAAGTCTTATTATCATTAATAAATTTCTCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57031511|ref|XP_533360.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57031511|ref|XP_533360.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-244, gnl|bosTau2|chr1 (43110822-43110655)
               

               
               74-244, gnl|Hg17|chr6 (132242703-132242873)
               

               
               74-244, gnl|Mm7|chr10 (24402335-24402166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-244, gnl|bosTau2|chr1 (43110822-43110655)
               

               
               74-244, gnl|Hg17|chr6 (132242703-132242873)
               

               
               74-244, gnl|Mm7|chr10 (24402335-24402166)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               nms (0.213858)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	74-244, gnl\|bosTau2\|chr1 (43110822-43110655)
	74-244, gnl\|Hg17\|chr6 (132242703-132242873)
	74-244, gnl\|Mm7\|chr10 (24402335-24402166)

	nms (0.213858)
	col (0.195008)
	sag (0.182715)
	rec (0.17307)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	jca (0.11396)
	nbm (0.0993246)