Ss1.1-risp07_e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTAACTGGCCAGCCAAGTGAAGATTAATAATAATTGTCCCCAAGCACTTCTTGTGGTT CATTAACTGAAAGACTGCTGAGACAAAATGCTGAGCTGACAGGACATATCAGCCAACTAA CTGAAGAAAAGAATGATTTAAGAAACATGGTTATGAAGCTGGAGGAGCAGATCAGGTGTT ATCGGACAGGAGCTGGCAGAGATTATTCTTCCAGGTTTTCATTCAGTGGTGGCCCCAACA TTGAAGCCATCATTGCTTCAGAAAAAGAAGTCTGGAACAGAGAAAAGTTGACTCTCCAAA AATCCTTGAAAAGGGCAGAAGCCGAAGTGTACAAACTCAAGGCTGAACTAAGAAATGAAG CTTTACTTCAAAATCTGAGCCCTGAGTCTGAGCACACCACAATAAAGAGAATTTATGGTA AATACCTGAGGGCAGAAAGTTTTCGGAAGGCTCTCATTTATCAAAAGAAATACCTGCTGC TGTTACTAGGTGGGTTTCAGGAATGTGAGGATGCCAGCCTGGCTCTACTTGCCCGGATGG GGGCGCAGCCAGCCTTTGCAGATCTTGAGGTGATCACCAACCGTCCAAAGGGCTTCACCA GGTTTCGTTCAGCTGTCAGAGTGTCCATGGCAATTTCGAGAATGAAATTTTTGGTTCGAC GGTGGCATCGAGTCACAAGTTCCGGTCCCATCAATATTAACAGGGATGGCTTTGGACTGA ATCCAGGTGCTGAAAAGACTGACTCATTTTATCATTCTTCTGGTGGATTGGAGCTATATG GAGAACCAAGACACACTGCGTATCGCTCAAGATCAGATCTGGACTATCCAAGGTCTCCTT TACCATTTCAGAATAGGTACCCAGGCACTCCAGCTGATTTAAATCCCAGTTCTTTAGCAT GCTCTCAGCTTCAGAATTATGATCCTGACAGAGCCCTGACAGATTATATCACTCGGCTAG AGGCGCTACAGAGACGGCTTGGAACTGTACAGTCAGGTTCAACTCAGTTTCATGCTGGCA TGAGAAGATAATCCTTTGAAACATGAATCAAAGTGATTTTAAACAAATTCCCTTTTGTAA ATCAATGGTTCTTTTGTGCTTTTGTATTGTGGATATTCACCGGGACCAATACAAACACAG CTTATGATTGTATACAAATCCCTTGCCAGCACATGAAAACAAACTGGATTCTGTACATAT AAGCATTGTGTATGTATTCATGCACAATAATCATCAAATTACATGTATATTTGTGGAATG CTAATTTAAATGATTAAATTATAAACCTTGTGTATTTATCAAATGGGTGAAAAGATTAAA CTTTTGCGCATTATGATACTGTTGAATGTGTAGCTCGAGGTGTCCTGCACTTTTCTTATA AGGCTACTGAAGTTACATGTTACTGCCTAATATATTTGCTACTGGTGATAAAGACAGATA ATATCACTTGTAGAGACCTATTTTTGTATAATGGTAGAAGTTTTGGATTTTATGGGGTAT TTTGTCAAGTACTGAAATAAAAATGACTTCACCATTTTAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTAACTGGCCAGCCAAGTGAAGATTAATAATAATTGTCCCCAAGCACTTCTTGTGGTT CATTAACTGAAAGACTGCTGAGACAAAATGCTGAGCTGACAGGACATATCAGCCAACTAA CTGAAGAAAAGAATGATTTAAGAAACATGGTTATGAAGCTGGAGGAGCAGATCAGGTGTT ATCGGACAGGAGCTGGCAGAGATTATTCTTCCAGGTTTTCATTCAGTGGTGGCCCCAACA TTGAAGCCATCATTGCTTCAGAAAAAGAAGTCTGGAACAGAGAAAAGTTGACTCTCCAAA AATCCTTGAAAAGGGCAGAAGCCGAAGTGTACAAACTCAAGGCTGAACTAAGAAATGAAG CTTTACTTCAAAATCTGAGCCCTGAGTCTGAGCACACCACAATAAAGAGAATTTATGGTA AATACCTGAGGGCAGAAAGTTTTCGGAAGGCTCTCATTTATCAAAAGAAATACCTGCTGC TGTTACTAGGTGGGTTTCAGGAATGTGAGGATGCCAGCCTGGCTCTACTTGCCCGGATGG GGGCGCAGCCAGCCTTTGCAGATCTTGAGGTGATCACCAACCGTCCAAAGGGCTTCACCA GGTTTCGTTCAGCTGTCAGAGTGTCCATGGCAATTTCGAGAATGAAATTTTTGGTTCGAC GGTGGCATCGAGTCACAAGTTCCGGTCCCATCAATATTAACAGGGATGGCTTTGGACTGA ATCCAGGTGCTGAAAAGACTGACTCATTTTATCATTCTTCTGGTGGATTGGAGCTATATG GAGAACCAAGACACACTGCGTATCGCTCAAGATCAGATCTGGACTATCCAAGGTCTCCTT TACCATTTCAGAATAGGTACCCAGGCACTCCAGCTGATTTAAATCCCAGTTCTTTAGCAT GCTCTCAGCTTCAGAATTATGATCCTGACAGAGCCCTGACAGATTATATCACTCGGCTAG AGGCGCTACAGAGACGGCTTGGAACTGTACAGTCAGGTTCAACTCAGTTTCATGCTGGCA TGAGAAGATAATCCTTTGAAACATGAATCAAAGTGATTTTAAACAAATTCCCTTTTGTAA ATCAATGGTTCTTTTGTGCTTTTGTATTGTGGATATTCACCGGGACCAATACAAACACAG CTTATGATTGTATACAAATCCCTTGCCAGCACATGAAAACAAACTGGATTCTGTACATAT AAGCATTGTGTATGTATTCATGCACAATAATCATCAAATTACATGTATATTTGTGGAATG CTAATTTAAATGATTAAATTATAAACCTTGTGTATTTATCAAATGGGTGAAAAGATTAAA CTTTTGCGCATTATGATACTGTTGAATGTGTAGCTCGAGGTGTCCTGCACTTTTCTTATA AGGCTACTGAAGTTACATGTTACTGCCTAATATATTTGCTACTGGTGATAAAGACAGATA ATATCACTTGTAGAGACCTATTTTTGTATAATGGTAGAAGTTTTGGATTTTATGGGGTAT TTTGTCAAGTACTGAAATAAAAATGACTTCACCATTTTAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1108-1265, + strand, RNAz p=0.876861 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1108-1265, + strand, RNAz p=0.876861 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005751, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 37-205, gnl|bosTau2|chr4 (854034-854205) | |
| 37-205, gnl|canFam2|chr14 (20678453-20678657) | |
| 37-205, gnl|danRer3|chr9 (2785631-2785765) | |
| 37-205, gnl|dasNov1|scaffold_11642 (39901-39695) | |
| 37-205, gnl|fr1|chrUn (220561001-220561172) | |
| 37-205, gnl|galGal2|chr2 (21796210-21796416) | |
| 37-205, gnl|hg17|chr7 (91373639-91373843) | |
| 37-205, gnl|Hg17|chr7 (91373662-91373833) | |
| 37-205, gnl|loxAfr1|scaffold_11726 (89288-89084) | |
| 37-205, gnl|mm7|chr5 (4073735-4073937) | |
| 37-205, gnl|Mm7|chr5 (4073756-4073927) | |
| 37-205, gnl|monDom2|scaffold_7 (60091995-60092199) | |
| 37-205, gnl|oryCun1|scaffold_208109 (59134-59338) | |
| 37-205, gnl|panTro1|chr6 (92928243-92928447) | |
| 37-205, gnl|rheMac2|chr3 (125146523-125146319) | |
| 37-205, gnl|rn3|chr4 (26791175-26790973) | |
| 37-205, gnl|tetNig1|chr21_random (1884765-1884619) | |
| 37-205, gnl|xenTro1|scaffold_182 (249644-249456) | |
| 406-640, gnl|bosTau2|chr4 (856496-856730) | |
| 406-640, gnl|canFam2|chr14 (20680705-20680993) | |
| 406-640, gnl|danRer3|chr9 (2788636-2788868) | |
| 406-640, gnl|dasNov1|scaffold_11642 (36064-35780) | |
| 406-640, gnl|echTel1|scaffold_315915 (128207-128489) | |
| 406-640, gnl|fr1|chrUn (220561517-220561771) | |
| 406-640, gnl|galGal2|chr2 (21797574-21797854) | |
| 406-640, gnl|hg17|chr7 (91376538-91376820) | |
| 406-640, gnl|Hg17|chr7 (91376557-91376791) | |
| 406-640, gnl|loxAfr1|scaffold_11726 (85588-85307) | |
| 406-640, gnl|mm7|chr5 (4076284-4076565) | |
| 406-640, gnl|Mm7|chr5 (4076303-4076537) | |
| 406-640, gnl|monDom2|scaffold_7 (60101056-60101342) | |
| 406-640, gnl|oryCun1|scaffold_206745 (29341-29619) | |
| 406-640, gnl|panTro1|chr6 (92931089-92931371) | |
| 406-640, gnl|rheMac2|chr3 (125143669-125143386) | |
| 406-640, gnl|rn3|chr4 (26788657-26788380) | |
| 406-640, gnl|tetNig1|chr21_random (1884364-1884110) | |
| 406-640, gnl|xenTro1|scaffold_182 (248032-247747) | |
| 711-859, gnl|bosTau2|chr4 (859972-860119) | |
| 711-859, gnl|canFam2|chr14 (20684679-20684845) | |
| 711-859, gnl|galGal2|chr2 (21799158-21799278) | |
| 711-859, gnl|hg17|chr7 (91381242-91381409) | |
| 711-859, gnl|Hg17|chr7 (91381243-91381390) | |
| 711-859, gnl|mm7|chr5 (4083175-4083342) | |
| 711-859, gnl|Mm7|chr5 (4083177-4083324) | |
| 711-859, gnl|monDom2|scaffold_7 (60103796-60103963) | |
| 711-859, gnl|oryCun1|scaffold_206745 (32289-32456) | |
| 711-859, gnl|panTro1|chr6 (92935796-92935958) | |
| 711-859, gnl|rheMac2|chr3 (125139018-125138851) | |
| 711-859, gnl|rn3|chr4 (26780961-26780794) | |
| 711-859, gnl|xenTro1|scaffold_182 (244350-244192) | |
| 995-1540, gnl|bosTau2|chr4 (862193-862732) | |
| 995-1540, gnl|Hg17|chr7 (91384085-91384633) | |
| 995-1540, gnl|Mm7|chr5 (4085663-4086205) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-205, gnl|bosTau2|chr4 (854034-854205) | |
| 37-205, gnl|canFam2|chr14 (20678453-20678657) | |
| 37-205, gnl|danRer3|chr9 (2785631-2785765) | |
| 37-205, gnl|dasNov1|scaffold_11642 (39901-39695) | |
| 37-205, gnl|fr1|chrUn (220561001-220561172) | |
| 37-205, gnl|galGal2|chr2 (21796210-21796416) | |
| 37-205, gnl|hg17|chr7 (91373639-91373843) | |
| 37-205, gnl|Hg17|chr7 (91373662-91373833) | |
| 37-205, gnl|loxAfr1|scaffold_11726 (89288-89084) | |
| 37-205, gnl|mm7|chr5 (4073735-4073937) | |
| 37-205, gnl|Mm7|chr5 (4073756-4073927) | |
| 37-205, gnl|monDom2|scaffold_7 (60091995-60092199) | |
| 37-205, gnl|oryCun1|scaffold_208109 (59134-59338) | |
| 37-205, gnl|panTro1|chr6 (92928243-92928447) | |
| 37-205, gnl|rheMac2|chr3 (125146523-125146319) | |
| 37-205, gnl|rn3|chr4 (26791175-26790973) | |
| 37-205, gnl|tetNig1|chr21_random (1884765-1884619) | |
| 37-205, gnl|xenTro1|scaffold_182 (249644-249456) | |
| 406-640, gnl|bosTau2|chr4 (856496-856730) | |
| 406-640, gnl|canFam2|chr14 (20680705-20680993) | |
| 406-640, gnl|danRer3|chr9 (2788636-2788868) | |
| 406-640, gnl|dasNov1|scaffold_11642 (36064-35780) | |
| 406-640, gnl|echTel1|scaffold_315915 (128207-128489) | |
| 406-640, gnl|fr1|chrUn (220561517-220561771) | |
| 406-640, gnl|galGal2|chr2 (21797574-21797854) | |
| 406-640, gnl|hg17|chr7 (91376538-91376820) | |
| 406-640, gnl|Hg17|chr7 (91376557-91376791) | |
| 406-640, gnl|loxAfr1|scaffold_11726 (85588-85307) | |
| 406-640, gnl|mm7|chr5 (4076284-4076565) | |
| 406-640, gnl|Mm7|chr5 (4076303-4076537) | |
| 406-640, gnl|monDom2|scaffold_7 (60101056-60101342) | |
| 406-640, gnl|oryCun1|scaffold_206745 (29341-29619) | |
| 406-640, gnl|panTro1|chr6 (92931089-92931371) | |
| 406-640, gnl|rheMac2|chr3 (125143669-125143386) | |
| 406-640, gnl|rn3|chr4 (26788657-26788380) | |
| 406-640, gnl|tetNig1|chr21_random (1884364-1884110) | |
| 406-640, gnl|xenTro1|scaffold_182 (248032-247747) | |
| 711-859, gnl|bosTau2|chr4 (859972-860119) | |
| 711-859, gnl|canFam2|chr14 (20684679-20684845) | |
| 711-859, gnl|galGal2|chr2 (21799158-21799278) | |
| 711-859, gnl|hg17|chr7 (91381242-91381409) | |
| 711-859, gnl|Hg17|chr7 (91381243-91381390) | |
| 711-859, gnl|mm7|chr5 (4083175-4083342) | |
| 711-859, gnl|Mm7|chr5 (4083177-4083324) | |
| 711-859, gnl|monDom2|scaffold_7 (60103796-60103963) | |
| 711-859, gnl|oryCun1|scaffold_206745 (32289-32456) | |
| 711-859, gnl|panTro1|chr6 (92935796-92935958) | |
| 711-859, gnl|rheMac2|chr3 (125139018-125138851) | |
| 711-859, gnl|rn3|chr4 (26780961-26780794) | |
| 711-859, gnl|xenTro1|scaffold_182 (244350-244192) | |
| 995-1540, gnl|bosTau2|chr4 (862193-862732) | |
| 995-1540, gnl|Hg17|chr7 (91384085-91384633) | |
| 995-1540, gnl|Mm7|chr5 (4085663-4086205) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| lin (0.582411) | |
| spl (0.572738) | |
| kid (0.389206) | |
| fty (0.351679) | |
| fat (0.294855) | |
| fce (0.271592) | |
| sug (0.254582) | |
| thg (0.253582) | |
| ece (0.229305) | |
| sag (0.182715) | |
| ill (0.175593) | |
| fco (0.157208) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.582411) | |
| spl (0.572738) | |
| kid (0.389206) | |
| fty (0.351679) | |
| fat (0.294855) | |
| fce (0.271592) | |
| sug (0.254582) | |
| thg (0.253582) | |
| ece (0.229305) | |
| sag (0.182715) | |
| ill (0.175593) | |
| fco (0.157208) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| ldo (0.0970026) |