Non-Coding RNA Search

Ss1.1-risp07_g23.5

Sequence:


               
               TGAAAGCATTAGCAAATCATTTCCCTGATCCAGGTTCATTATTAGAGAGTTTAACTAGCC
ATATGAATGAATACCTTTTTATGCTGAAGGTAGAGAGTATAGATCAGATTCAGTCTAGAG
AGCTTAATTACTTGATTTTCTTGTTTGATAATGATTTATAGGCTTTGGGGAAACACCAAA
ACCAAGCTCCAGAATGACAATTAAGCAGATATTTGCTACTACAGTATTGAGGCTCTGGGC
TCCTTCAGTTTCCAGTGATGACCACTATCTATACAATCAATCATGCTGAAATGCATTTTT
TACTTATCAAGAAACAACAAAAAACTTAAAAGGCACACATCCTTGAGGCCTTTGGATTGC
AATTTAACCTAAAAAGTTCATTTCCTAAAAAAAAAATTCTGCATTTGGTCCTCCTCTTAC
CCACGATTTCAGTCATCTTCAAAGGGTTCTTGAGAACCCAGGCCTGGATTTTATTCATTA
ACTTAAGAAGGAAACGTTTCATTTGCCAGCTTCAATAGAAATAGTTGTGGTCTAATAAGG
CTGAACATTTAAAAGAACAGATTTTTCTCACAGTGGTAATTTTAGCAAAAGAAGAATAAT
CAGCTCTGACAATGTTATCCACAGAGAAAAGAGAGGTGCCGTTTCTAATCAGAGAGATGG
CTAACACACTTCAGCATTTCATCACTGGCTGGTTAGTTGACAGAATTTGTCCACACAACT
TCATTCTAGAGCAAGTGATCCTCAGGCTGGCTCCATTTTGGTATTACCTGGCAAGCTTTC
AAAAAATTGGTACCTGGTCCAGCGATTCTGAGAGCCTGAGCAGGAGGATTTCTACAAAGG
GAAGCCTTCCCAAGCAATCCTGAAGTGCCATCAGAATTGAAGACCACTGCTGTAAAAAGA
AAAGTTATCCACTATGCCAACAAAGAGTTGTGGAGTCATTTGAGAATCTTCTGTTAACTT
TGTCTTGGCCATTCTCACACACATAAAAAAATATTGATATGATATTGACTCAAATTAATG
CCTTTTGACCAAATTTTAAGCAATAAAATTCTTTGAAAACCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGCATTAGCAAATCATTTCCCTGATCCAGGTTCATTATTAGAGAGTTTAACTAGCC
ATATGAATGAATACCTTTTTATGCTGAAGGTAGAGAGTATAGATCAGATTCAGTCTAGAG
AGCTTAATTACTTGATTTTCTTGTTTGATAATGATTTATAGGCTTTGGGGAAACACCAAA
ACCAAGCTCCAGAATGACAATTAAGCAGATATTTGCTACTACAGTATTGAGGCTCTGGGC
TCCTTCAGTTTCCAGTGATGACCACTATCTATACAATCAATCATGCTGAAATGCATTTTT
TACTTATCAAGAAACAACAAAAAACTTAAAAGGCACACATCCTTGAGGCCTTTGGATTGC
AATTTAACCTAAAAAGTTCATTTCCTAAAAAAAAAATTCTGCATTTGGTCCTCCTCTTAC
CCACGATTTCAGTCATCTTCAAAGGGTTCTTGAGAACCCAGGCCTGGATTTTATTCATTA
ACTTAAGAAGGAAACGTTTCATTTGCCAGCTTCAATAGAAATAGTTGTGGTCTAATAAGG
CTGAACATTTAAAAGAACAGATTTTTCTCACAGTGGTAATTTTAGCAAAAGAAGAATAAT
CAGCTCTGACAATGTTATCCACAGAGAAAAGAGAGGTGCCGTTTCTAATCAGAGAGATGG
CTAACACACTTCAGCATTTCATCACTGGCTGGTTAGTTGACAGAATTTGTCCACACAACT
TCATTCTAGAGCAAGTGATCCTCAGGCTGGCTCCATTTTGGTATTACCTGGCAAGCTTTC
AAAAAATTGGTACCTGGTCCAGCGATTCTGAGAGCCTGAGCAGGAGGATTTCTACAAAGG
GAAGCCTTCCCAAGCAATCCTGAAGTGCCATCAGAATTGAAGACCACTGCTGTAAAAAGA
AAAGTTATCCACTATGCCAACAAAGAGTTGTGGAGTCATTTGAGAATCTTCTGTTAACTT
TGTCTTGGCCATTCTCACACACATAAAAAAATATTGATATGATATTGACTCAAATTAATG
CCTTTTGACCAAATTTTAAGCAATAAAATTCTTTGAAAACCAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-524, gnl|bosTau2|chr9 (38027000-38027520)
               

               
               3-524, gnl|Hg17|chr6 (129879673-129880207)
               

               
               3-524, gnl|Mm7|chr10 (26733194-26732667)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-524, gnl|bosTau2|chr9 (38027000-38027520)
               

               
               3-524, gnl|Hg17|chr6 (129879673-129880207)
               

               
               3-524, gnl|Mm7|chr10 (26733194-26732667)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               tra (0.123092)

	3-524, gnl\|bosTau2\|chr9 (38027000-38027520)
	3-524, gnl\|Hg17\|chr6 (129879673-129880207)
	3-524, gnl\|Mm7\|chr10 (26733194-26732667)