Ss1.1-risp08_c21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTAAAACAGTGGTTCTTAAGTCATTTTTTCCCAGTTGTACACCAGAGGGATATCACAT ATTCATTTCAGGTGCCCTGGCTTACAACTTAATGAAATTTTTTTTAAAAGAGACTTAAAA AGATGAAGGTAGAGAAGAAATTATCCGGGTTGTATACATATTAGTTTGGTTATCTGTGTT CTTTGACTCTTCTGTTATATACACTGTTTATTTTTTTTTAGGGCCATACCCTAGGCACAT GGAGGTTCCCAGGCTAGGGGTCGAATCAGAGATCCAGCTGCCAGCCTACACCACAGCCAC AGCAAGAGGAAATCTGAGCTGCGTCTGTGACCGACACCACAGGTCACGGCATCACCAGAT CCTGAACCCACTGATCGAGGCCAGGGATCAAACCCTTGTCCTCACGGATACTAGTCAGGC TCATTAACTGCTTTCTTCAAAATTTAGTAGCTCACAAGGACATTGCTAACTGCCTTGCAG TGAGAGAATTTCTTTGTCTGGATGATCCACCAGGTCCATTTGATAGCCTAGAAGAAAGCA GGGCTTTCTGTGAAACTTTAGAAGAAACAAACTACCGTTTTCAAAAAGAACTACTTGAAA AACAAAAGGAGCTGGAATCATTGAAGAAACTGCTCAATGAGAAACAACTTCATATAGACT CTCTAGAAAACAGAATCAGGACATTATCTCTAGAACCTGAAGGATCACTACTCGTGTCAG GAATAGAAGGTGGACAGATCCTAAAGGTGGAGTCCCCTGCACTTGAGGTTGATCAGGATG TCTTGGACAAAGAATCTAGAGCTGATAATAAGCAATGCTCAAGCTTTAGTGAACCTGATA ATTCTGTATCAGACATAGAAGTAGCAGAAGTAGCATATAATGCGGAAGACTAATGCATCT TAAGCGGTTCCTTCCATTTTTTATGTTTCTGTAAATTTAGAGTAGAGTGGCAAATATTTA AAAAGAAAAAAAGAGACTGAAGCATTTACAGAAAACGGCAAGATTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTAAAACAGTGGTTCTTAAGTCATTTTTTCCCAGTTGTACACCAGAGGGATATCACAT ATTCATTTCAGGTGCCCTGGCTTACAACTTAATGAAATTTTTTTTAAAAGAGACTTAAAA AGATGAAGGTAGAGAAGAAATTATCCGGGTTGTATACATATTAGTTTGGTTATCTGTGTT CTTTGACTCTTCTGTTATATACACTGTTTATTTTTTTTTAGGGCCATACCCTAGGCACAT GGAGGTTCCCAGGCTAGGGGTCGAATCAGAGATCCAGCTGCCAGCCTACACCACAGCCAC AGCAAGAGGAAATCTGAGCTGCGTCTGTGACCGACACCACAGGTCACGGCATCACCAGAT CCTGAACCCACTGATCGAGGCCAGGGATCAAACCCTTGTCCTCACGGATACTAGTCAGGC TCATTAACTGCTTTCTTCAAAATTTAGTAGCTCACAAGGACATTGCTAACTGCCTTGCAG TGAGAGAATTTCTTTGTCTGGATGATCCACCAGGTCCATTTGATAGCCTAGAAGAAAGCA GGGCTTTCTGTGAAACTTTAGAAGAAACAAACTACCGTTTTCAAAAAGAACTACTTGAAA AACAAAAGGAGCTGGAATCATTGAAGAAACTGCTCAATGAGAAACAACTTCATATAGACT CTCTAGAAAACAGAATCAGGACATTATCTCTAGAACCTGAAGGATCACTACTCGTGTCAG GAATAGAAGGTGGACAGATCCTAAAGGTGGAGTCCCCTGCACTTGAGGTTGATCAGGATG TCTTGGACAAAGAATCTAGAGCTGATAATAAGCAATGCTCAAGCTTTAGTGAACCTGATA ATTCTGTATCAGACATAGAAGTAGCAGAAGTAGCATATAATGCGGAAGACTAATGCATCT TAAGCGGTTCCTTCCATTTTTTATGTTTCTGTAAATTTAGAGTAGAGTGGCAAATATTTA AAAAGAAAAAAAGAGACTGAAGCATTTACAGAAAACGGCAAGATTGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 563-680, - strand, RNAz p=0.529448 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 563-680, - strand, RNAz p=0.529448 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chr14 (49875542-49875654) | |
| 1-116, gnl|Hg17|chr8 (82878347-82878235) | |
| 542-680, gnl|bosTau2|chr14 (49875867-49876005) | |
| 542-680, gnl|canFam2|chr29 (31890232-31890403) | |
| 542-680, gnl|dasNov1|scaffold_85560 (6044-6215) | |
| 542-680, gnl|echTel1|scaffold_302826 (12363-12192) | |
| 542-680, gnl|galGal2|chr2 (120881240-120881411) | |
| 542-680, gnl|hg17|chr8 (82877858-82878029) | |
| 542-680, gnl|Hg17|chr8 (82878019-82877881) | |
| 542-680, gnl|loxAfr1|scaffold_9832 (36256-36085) | |
| 542-680, gnl|mm7|chr3 (10428903-10429072) | |
| 542-680, gnl|Mm7|chr3 (10429062-10428924) | |
| 542-680, gnl|monDom2|scaffold_4 (75404376-75404206) | |
| 542-680, gnl|oryCun1|scaffold_212838 (47468-47304) | |
| 542-680, gnl|panTro1|chr7 (85016807-85016978) | |
| 542-680, gnl|rheMac2|chr8 (84234201-84234372) | |
| 542-680, gnl|rn3|chr2 (93238577-93238407) | |
| 542-680, gnl|tetNig1|chr15 (3186205-3186363) | |
| 798-1008, gnl|bosTau2|chr14 (49877369-49877580) | |
| 798-1008, gnl|canFam2|chr29 (31888116-31888759) | |
| 798-1008, gnl|dasNov1|scaffold_85560 (3899-4535) | |
| 798-1008, gnl|echTel1|scaffold_302826 (14411-13769) | |
| 798-1008, gnl|galGal2|chr2 (120878094-120878748) | |
| 798-1008, gnl|hg17|chr8 (82875770-82876405) | |
| 798-1008, gnl|Hg17|chr8 (82876385-82876172) | |
| 798-1008, gnl|loxAfr1|scaffold_9832 (38173-37538) | |
| 798-1008, gnl|mm7|chr3 (10426825-10427425) | |
| 798-1008, gnl|Mm7|chr3 (10427410-10427224) | |
| 798-1008, gnl|monDom2|scaffold_4 (75408856-75408226) | |
| 798-1008, gnl|oryCun1|scaffold_212838 (49007-48378) | |
| 798-1008, gnl|panTro1|chr7 (85014715-85015350) | |
| 798-1008, gnl|rheMac2|chr8 (84232138-84232772) | |
| 798-1008, gnl|rn3|chr2 (93240828-93240227) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chr14 (49875542-49875654) | |
| 1-116, gnl|Hg17|chr8 (82878347-82878235) | |
| 542-680, gnl|bosTau2|chr14 (49875867-49876005) | |
| 542-680, gnl|canFam2|chr29 (31890232-31890403) | |
| 542-680, gnl|dasNov1|scaffold_85560 (6044-6215) | |
| 542-680, gnl|echTel1|scaffold_302826 (12363-12192) | |
| 542-680, gnl|galGal2|chr2 (120881240-120881411) | |
| 542-680, gnl|hg17|chr8 (82877858-82878029) | |
| 542-680, gnl|Hg17|chr8 (82878019-82877881) | |
| 542-680, gnl|loxAfr1|scaffold_9832 (36256-36085) | |
| 542-680, gnl|mm7|chr3 (10428903-10429072) | |
| 542-680, gnl|Mm7|chr3 (10429062-10428924) | |
| 542-680, gnl|monDom2|scaffold_4 (75404376-75404206) | |
| 542-680, gnl|oryCun1|scaffold_212838 (47468-47304) | |
| 542-680, gnl|panTro1|chr7 (85016807-85016978) | |
| 542-680, gnl|rheMac2|chr8 (84234201-84234372) | |
| 542-680, gnl|rn3|chr2 (93238577-93238407) | |
| 542-680, gnl|tetNig1|chr15 (3186205-3186363) | |
| 798-1008, gnl|bosTau2|chr14 (49877369-49877580) | |
| 798-1008, gnl|canFam2|chr29 (31888116-31888759) | |
| 798-1008, gnl|dasNov1|scaffold_85560 (3899-4535) | |
| 798-1008, gnl|echTel1|scaffold_302826 (14411-13769) | |
| 798-1008, gnl|galGal2|chr2 (120878094-120878748) | |
| 798-1008, gnl|hg17|chr8 (82875770-82876405) | |
| 798-1008, gnl|Hg17|chr8 (82876385-82876172) | |
| 798-1008, gnl|loxAfr1|scaffold_9832 (38173-37538) | |
| 798-1008, gnl|mm7|chr3 (10426825-10427425) | |
| 798-1008, gnl|Mm7|chr3 (10427410-10427224) | |
| 798-1008, gnl|monDom2|scaffold_4 (75408856-75408226) | |
| 798-1008, gnl|oryCun1|scaffold_212838 (49007-48378) | |
| 798-1008, gnl|panTro1|chr7 (85014715-85015350) | |
| 798-1008, gnl|rheMac2|chr8 (84232138-84232772) | |
| 798-1008, gnl|rn3|chr2 (93240828-93240227) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.150376) | |
| ski (0.146735) | |
| ret (0.128733) |