Non-Coding RNA Search

Ss1.1-risp08_d19.5

Sequence:


               
               CAACTTCAGGACCTGAGAAATGCATCGAGACTGATTCGTGTGAATCCCGAAAGTACAACG
TCAGTGGTCTGACACCTGGACCTGTTTATGTGTATACGTATATATGGCTTATATATATTA
TTTATATTTATATTAAGTTGCATTAGCGTATTCTTTATAGTCTCAAACACAGCCTAAAAA
TAAAAGATGCCTTCTCAGAAATGCGAAAATCAAAAGGAGATTGAAAAACATGTTAAACCC
ACGTAACAAAAACATTGAATTAGTAGAACATACAATATGCTTTCCTTTTAAATTATGCTA
ACTCTCTAATGACTATATATCGTCACACCAGAGCATTTCAACTTGTGTTTTGAAAGTTTC
CCAGTTCACTAGGTTTCTTAAAGGGCACAGTGCCATTCCTGCCTCGTGTACTTCTGCACC
TTAAAATGTGGTTGAACAATTTGGGGAAAAGAAAGGAGGAGTTGAGAAAACTGGTTTCAG
GGTAAATTTTGGTCAACAGAATTCCTTCATGAAGGTAGCTGGTGTGTGGACTTACTCCAA
TCCCTGTAGAAGCTGTCATACAAGCAGTTCAGCAAATACTTCCATCATAATTTAAATGGC
CCATTATTGTCTGCTGTTAATTAGCATCATTTTAATACTTGATTTGGGAGCATTTACTTG
AAAGTCTTAACAACATACTTTTTTTGTTTTGTGGTTTTTTTTAAACGTGTTCCTGAGTTG
TCAAGTTCCAGCTGGAGCTTCTGTCTTTATCATATTAAAAAAAAAAAAAAAAGAAGAAAA
ATAACAAAGGGCACACTGAGGGTCTGGCAGCAGCCAGTGATTTTAGCTGTCTGGATCCCC
TTTCAGTGTGGGTTACATATAGGGGCTTGGACTTCATACAGATGGGTGAAAAGTTTTCAT
TGAAATACTTAACTTTAGGTTTCAGGGTCTGGCTGGATGGGAATGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTTCAGGACCTGAGAAATGCATCGAGACTGATTCGTGTGAATCCCGAAAGTACAACG
TCAGTGGTCTGACACCTGGACCTGTTTATGTGTATACGTATATATGGCTTATATATATTA
TTTATATTTATATTAAGTTGCATTAGCGTATTCTTTATAGTCTCAAACACAGCCTAAAAA
TAAAAGATGCCTTCTCAGAAATGCGAAAATCAAAAGGAGATTGAAAAACATGTTAAACCC
ACGTAACAAAAACATTGAATTAGTAGAACATACAATATGCTTTCCTTTTAAATTATGCTA
ACTCTCTAATGACTATATATCGTCACACCAGAGCATTTCAACTTGTGTTTTGAAAGTTTC
CCAGTTCACTAGGTTTCTTAAAGGGCACAGTGCCATTCCTGCCTCGTGTACTTCTGCACC
TTAAAATGTGGTTGAACAATTTGGGGAAAAGAAAGGAGGAGTTGAGAAAACTGGTTTCAG
GGTAAATTTTGGTCAACAGAATTCCTTCATGAAGGTAGCTGGTGTGTGGACTTACTCCAA
TCCCTGTAGAAGCTGTCATACAAGCAGTTCAGCAAATACTTCCATCATAATTTAAATGGC
CCATTATTGTCTGCTGTTAATTAGCATCATTTTAATACTTGATTTGGGAGCATTTACTTG
AAAGTCTTAACAACATACTTTTTTTGTTTTGTGGTTTTTTTTAAACGTGTTCCTGAGTTG
TCAAGTTCCAGCTGGAGCTTCTGTCTTTATCATATTAAAAAAAAAAAAAAAAGAAGAAAA
ATAACAAAGGGCACACTGAGGGTCTGGCAGCAGCCAGTGATTTTAGCTGTCTGGATCCCC
TTTCAGTGTGGGTTACATATAGGGGCTTGGACTTCATACAGATGGGTGAAAAGTTTTCAT
TGAAATACTTAACTTTAGGTTTCAGGGTCTGGCTGGATGGGAATGAGG

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-353, gnl|bosTau2|chr28 (1871994-1872346)
               

               
               1-353, gnl|Hg17|chr1 (227778120-227777751)
               

               
               1-353, gnl|Mm7|chr8 (123482945-123482592)
               


               
               370-782, gnl|bosTau2|chr28 (1872448-1872872)
               

               
               370-782, gnl|Hg17|chr1 (227777412-227776997)
               


               
               837-943, gnl|bosTau2|chr28 (1872885-1872989)
               

               
               837-943, gnl|Hg17|chr1 (227776959-227776822)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr28 (1871994-1872346)
               

               
               1-353, gnl|Hg17|chr1 (227778120-227777751)
               

               
               1-353, gnl|Mm7|chr8 (123482945-123482592)
               


               
               370-782, gnl|bosTau2|chr28 (1872448-1872872)
               

               
               370-782, gnl|Hg17|chr1 (227777412-227776997)
               


               
               837-943, gnl|bosTau2|chr28 (1872885-1872989)
               

               
               837-943, gnl|Hg17|chr1 (227776959-227776822)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               isp (0.150376)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               sug (0.127291)

	1-353, gnl\|bosTau2\|chr28 (1871994-1872346)
	1-353, gnl\|Hg17\|chr1 (227778120-227777751)
	1-353, gnl\|Mm7\|chr8 (123482945-123482592)

	370-782, gnl\|bosTau2\|chr28 (1872448-1872872)
	370-782, gnl\|Hg17\|chr1 (227777412-227776997)

	837-943, gnl\|bosTau2\|chr28 (1872885-1872989)
	837-943, gnl\|Hg17\|chr1 (227776959-227776822)