Non-Coding RNA Search

Ss1.1-risp08_f21.5

Sequence:


               
               TTTCTAAGTATGAAATACTTGAAAAAACTATGGTGTAAATTTTTAGTGTTAATTACCTTT
ATCATGTGAATCTTTAAAAGTTAGGTCTTAATGATTTTACTGTTTCATCACAAGCAAATG
GTCTTCATTTTAATTGTCTGCCTTGACATTACAAACAGTGACATGCCATTGTATTTAAAG
GCCCAATATTACTACATTACTGACATTTTTGTTTGTTTTAGAATAAACTCTACATCTTTG
CACTACCTGATTGCCTCCAAGAGACTGTGGCTGCTTGGGGACAGGGACCATGTCTTATTC
ATTTTCGTGTCTCCAGCATCTAGTACAGTGCCAGATACATAGTAGGTGCTCAATAAATGT
TGTTGAAATCAGCTGAACTGCCAACAAAATACAAATAAGTATTAAAAGGCCATCACTATG
TAGCATACCGTCTCTTGTCCAAGTGCTGAAGGTTTGTTTTTGTTTTTTTTTTTTTTTTGA
AAAACAGAAGCTGAAAAAAATTTTACAGACAGCTATGGCATTGTCAAATTTTCTTAGAAT
TTTTGGCATCACTGATAATTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTAAGTATGAAATACTTGAAAAAACTATGGTGTAAATTTTTAGTGTTAATTACCTTT
ATCATGTGAATCTTTAAAAGTTAGGTCTTAATGATTTTACTGTTTCATCACAAGCAAATG
GTCTTCATTTTAATTGTCTGCCTTGACATTACAAACAGTGACATGCCATTGTATTTAAAG
GCCCAATATTACTACATTACTGACATTTTTGTTTGTTTTAGAATAAACTCTACATCTTTG
CACTACCTGATTGCCTCCAAGAGACTGTGGCTGCTTGGGGACAGGGACCATGTCTTATTC
ATTTTCGTGTCTCCAGCATCTAGTACAGTGCCAGATACATAGTAGGTGCTCAATAAATGT
TGTTGAAATCAGCTGAACTGCCAACAAAATACAAATAAGTATTAAAAGGCCATCACTATG
TAGCATACCGTCTCTTGTCCAAGTGCTGAAGGTTTGTTTTTGTTTTTTTTTTTTTTTTGA
AAAACAGAAGCTGAAAAAAATTTTACAGACAGCTATGGCATTGTCAAATTTTCTTAGAAT
TTTTGGCATCACTGATAATTCTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               239-357, + strand, RNAz p=0.829636

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-357, + strand, RNAz p=0.829636

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_003305, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003305, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-564, gnl|bosTau2|chr6 (816735-817266)
               

               
               2-564, gnl|Hg17|chr4 (123158443-123157911)
               

               
               2-564, gnl|Mm7|chr3 (36431983-36431462)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-564, gnl|bosTau2|chr6 (816735-817266)
               

               
               2-564, gnl|Hg17|chr4 (123158443-123157911)
               

               
               2-564, gnl|Mm7|chr3 (36431983-36431462)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               isp (0.150376)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               ret (0.128733)

	2-564, gnl\|bosTau2\|chr6 (816735-817266)
	2-564, gnl\|Hg17\|chr4 (123158443-123157911)
	2-564, gnl\|Mm7\|chr3 (36431983-36431462)