Non-Coding RNA Search

Ss1.1-risp08_n15.5

Sequence:


               
               AATTCCAATTCCCATGACTCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAATTTTAG
TTCGGTGCTATACAAAGAAAACCTGGGCACAGGAATCCCAGTCGCCATCACTCCAGAGAT
GCAGAGAGTCAAACTCAATCAAGAAAACCTTAGCTCGGTGTTATACAAAGAAAACATGGG
CAAGGGAACTCCTTTACCTGTCACCCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAA
TATTAGCTCGATTTTGTACAAAGAAAATGTGGGGAAAGGCACCCCAACCCCTGTCACTCC
AGAGATGCAGAGAGTCAAACGCAATCAAGAGAACATTAGCTCGGTGATATACAAAGAGAA
CCTGGGGAAAGCCACCCCCACACCCTTTACTCCTGAGATGGAAAGAGTCAAGCGCAATCA
AGAAAACTTTAGCTCGGTACTGTACAAAGAGAATATGAGAAAAGCAACTCCGACACCAGT
CACTCCAGAGATGGAGAGAGCTAAGCGCAACCAAGAAAATATTAGCTCGGTGCTCTATTC
TGATAGCTTCCGGAAACAAATACAAGGCAAAGCTGCCTATGTCTTGGACACGCCAGAGAT
GCGACGGGTGAGGGAGACCCAACGCCACATCTCAACGGTGAAATATCATGAAGACTTTGA
AAAACACAAGGGTTGCTTCACACCAGTGGTGACGGATCCCATCACTGAACGAGTAAAGAA
GAACACACAGGACTTCAGTGACATTAACTACCGAGGTATTCAGAGAAAAGTGGTAGAAAT
GGAGCAAAAGCGGAATGACCAGGATCAGGAAACTATTACAGGTTTACGTGTCTGGCGTAC
AAACCCTGGCTCAGTTTTTGACTATGATCCAGCAGAAGACAACATTCAATCCCGAAGCTT
ACACATGCTTAATGCGCAAGCTCAGCGCCGGAGCAGGGAGCAGTCGAGATCCGCCAGCGC
ACTGAGCATCAGCGGTGGTGAGGAGAAGTCGGAGCATTCAGAAGCTGCCCGCCTCTCCAC
CTACAGTGACGGGGGCGTCTTCTTCTCTGCAACCTCAGCAGCTTACAAACATGCAAAAAC
CACAGAGCTCCCACAGCAACGATCATCTTCAGTTGCCACCCAGCAGACAACAGTATCCTC
TATCCCATCTCATCCATCTACGGCTGGAAAAATCTTCCGTGCCATGTACGACTATATGGC
TGCTGATGCAGATGAGGTGTCCTTCAGAGATGGAGACGCCATTGTAAATGTTCAAGCTAT
TGATGAAGGCTGGATGTATGGCACCGTGCAGAGGACCGGCCGGACCGGCATGCTCCCAGC
CAACTATGTTGAAGCTATTTAGGCACTTCAAAGCCTCACGCCTGTCTACAGGACCTACCT
GCCGTTGGTATTTCAGTTTAGATTCTCCACTGTTCCCTGAGTTCTCAAGCTGCCTTGTGT
TTTGTGTCAGTATAATTTATGGCTGTACCATCCCTTAATTTGTTTATATATGTACTCCTA
TATTTCATCAGTAAAAGAAATGTTAGTATCACTAACCAGTCCAAGTATTAAACTAGACTT
GCTTCATTATCTTCTGGACTTGCACATAAAATTCAGATACATTAAACCCCATAGGTTTAT
TATTTTTAAAAACTGCCATCAAATTTTCCCTTCGGCTTAAAAGTTTCTGCATTGTTATAT
TATGGCTGTATCAACTCTTATCATGAACATGTTTAACATTTCTAAAACAAGGGTTCTGAA
CATCCTAAGCACAGTTTTAAAAAATGGCAGATATTTACCCTTTCTTTGCTTACCGAACTG
CTGTTGCTTTTATTTCTAATCCAATTCTGAAGTTATAAAGCTGATGGTAAGGTAGTAACT
AATAAACTCTATAATTCTGCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCAATTCCCATGACTCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAATTTTAG
TTCGGTGCTATACAAAGAAAACCTGGGCACAGGAATCCCAGTCGCCATCACTCCAGAGAT
GCAGAGAGTCAAACTCAATCAAGAAAACCTTAGCTCGGTGTTATACAAAGAAAACATGGG
CAAGGGAACTCCTTTACCTGTCACCCCAGAGATGGAGAGAGTCAAACACAATCAAGAAAA
TATTAGCTCGATTTTGTACAAAGAAAATGTGGGGAAAGGCACCCCAACCCCTGTCACTCC
AGAGATGCAGAGAGTCAAACGCAATCAAGAGAACATTAGCTCGGTGATATACAAAGAGAA
CCTGGGGAAAGCCACCCCCACACCCTTTACTCCTGAGATGGAAAGAGTCAAGCGCAATCA
AGAAAACTTTAGCTCGGTACTGTACAAAGAGAATATGAGAAAAGCAACTCCGACACCAGT
CACTCCAGAGATGGAGAGAGCTAAGCGCAACCAAGAAAATATTAGCTCGGTGCTCTATTC
TGATAGCTTCCGGAAACAAATACAAGGCAAAGCTGCCTATGTCTTGGACACGCCAGAGAT
GCGACGGGTGAGGGAGACCCAACGCCACATCTCAACGGTGAAATATCATGAAGACTTTGA
AAAACACAAGGGTTGCTTCACACCAGTGGTGACGGATCCCATCACTGAACGAGTAAAGAA
GAACACACAGGACTTCAGTGACATTAACTACCGAGGTATTCAGAGAAAAGTGGTAGAAAT
GGAGCAAAAGCGGAATGACCAGGATCAGGAAACTATTACAGGTTTACGTGTCTGGCGTAC
AAACCCTGGCTCAGTTTTTGACTATGATCCAGCAGAAGACAACATTCAATCCCGAAGCTT
ACACATGCTTAATGCGCAAGCTCAGCGCCGGAGCAGGGAGCAGTCGAGATCCGCCAGCGC
ACTGAGCATCAGCGGTGGTGAGGAGAAGTCGGAGCATTCAGAAGCTGCCCGCCTCTCCAC
CTACAGTGACGGGGGCGTCTTCTTCTCTGCAACCTCAGCAGCTTACAAACATGCAAAAAC
CACAGAGCTCCCACAGCAACGATCATCTTCAGTTGCCACCCAGCAGACAACAGTATCCTC
TATCCCATCTCATCCATCTACGGCTGGAAAAATCTTCCGTGCCATGTACGACTATATGGC
TGCTGATGCAGATGAGGTGTCCTTCAGAGATGGAGACGCCATTGTAAATGTTCAAGCTAT
TGATGAAGGCTGGATGTATGGCACCGTGCAGAGGACCGGCCGGACCGGCATGCTCCCAGC
CAACTATGTTGAAGCTATTTAGGCACTTCAAAGCCTCACGCCTGTCTACAGGACCTACCT
GCCGTTGGTATTTCAGTTTAGATTCTCCACTGTTCCCTGAGTTCTCAAGCTGCCTTGTGT
TTTGTGTCAGTATAATTTATGGCTGTACCATCCCTTAATTTGTTTATATATGTACTCCTA
TATTTCATCAGTAAAAGAAATGTTAGTATCACTAACCAGTCCAAGTATTAAACTAGACTT
GCTTCATTATCTTCTGGACTTGCACATAAAATTCAGATACATTAAACCCCATAGGTTTAT
TATTTTTAAAAACTGCCATCAAATTTTCCCTTCGGCTTAAAAGTTTCTGCATTGTTATAT
TATGGCTGTATCAACTCTTATCATGAACATGTTTAACATTTCTAAAACAAGGGTTCTGAA
CATCCTAAGCACAGTTTTAAAAAATGGCAGATATTTACCCTTTCTTTGCTTACCGAACTG
CTGTTGCTTTTATTTCTAATCCAATTCTGAAGTTATAAAGCTGATGGTAAGGTAGTAACT
AATAAACTCTATAATTCTGCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6P516_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P516_HUMAN

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               637-823, gnl|bosTau2|chr2 (9228013-9227827)
               

               
               637-823, gnl|Hg17|chr2 (152174304-152174118)
               

               
               637-823, gnl|Mm7|chr2 (52156589-52156403)
               


               
               903-1068, gnl|bosTau2|chr2 (9226672-9226509)
               

               
               903-1068, gnl|Hg17|chr2 (152172551-152172388)
               

               
               903-1068, gnl|Mm7|chr2 (52155111-52154942)
               


               
               1169-1671, gnl|bosTau2|chr2 (9221545-9221053)
               

               
               1169-1671, gnl|Mm7|chr2 (52144742-52144201)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               637-823, gnl|bosTau2|chr2 (9228013-9227827)
               

               
               637-823, gnl|Hg17|chr2 (152174304-152174118)
               

               
               637-823, gnl|Mm7|chr2 (52156589-52156403)
               


               
               903-1068, gnl|bosTau2|chr2 (9226672-9226509)
               

               
               903-1068, gnl|Hg17|chr2 (152172551-152172388)
               

               
               903-1068, gnl|Mm7|chr2 (52155111-52154942)
               


               
               1169-1671, gnl|bosTau2|chr2 (9221545-9221053)
               

               
               1169-1671, gnl|Mm7|chr2 (52144742-52144201)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               isp (9.17293)
               

               
               vin (8.64649)
               

               
               tbr (6.47549)
               

               
               bfe (5.99431)
               

               
               ste (2.97458)
               

               
               mas (2.52366)
               

               
               ldo (2.03706)
               

               
               ssp (2.0328)
               

               
               nms (1.71086)
               

               
               sme (0.91631)
               

               
               nep (0.551775)
               

               
               nca (0.410621)
               

               
               ctl (0.306138)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (9.17293)
               

               
               vin (8.64649)
               

               
               tbr (6.47549)
               

               
               bfe (5.99431)
               

               
               ste (2.97458)
               

               
               mas (2.52366)
               

               
               ldo (2.03706)
               

               
               ssp (2.0328)
               

               
               nms (1.71086)
               

               
               sme (0.91631)
               

               
               nep (0.551775)
               

               
               nca (0.410621)
               

               
               ctl (0.306138)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

	637-823, gnl\|bosTau2\|chr2 (9228013-9227827)
	637-823, gnl\|Hg17\|chr2 (152174304-152174118)
	637-823, gnl\|Mm7\|chr2 (52156589-52156403)

	903-1068, gnl\|bosTau2\|chr2 (9226672-9226509)
	903-1068, gnl\|Hg17\|chr2 (152172551-152172388)
	903-1068, gnl\|Mm7\|chr2 (52155111-52154942)

	1169-1671, gnl\|bosTau2\|chr2 (9221545-9221053)
	1169-1671, gnl\|Mm7\|chr2 (52144742-52144201)

	isp (9.17293)
	vin (8.64649)
	tbr (6.47549)
	bfe (5.99431)
	ste (2.97458)
	mas (2.52366)
	ldo (2.03706)
	ssp (2.0328)
	nms (1.71086)
	sme (0.91631)
	nep (0.551775)
	nca (0.410621)
	ctl (0.306138)
	mgp (0.230681)
	ton (0.1755)
	eye (0.170503)
	spl (0.143184)
	che (0.136314)
	thg (0.126791)
	ese (0.126502)