Ss1.1-risp09_d23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGTGGCGGCGGCGGCGGCGGCGGGAGGCTAGTGACCCGCGGAGGGGCGCCCCGGCCA TGACTGCGGAGCTGCAGCAGGACGACGCGGCCGGAGCAGCGGACCGCCACGGCTCGAGCT GCCAAATGCTGTTAAACCAACTGAGAGAAATTACAGGCATTCAGGACCCTTCTTTTCTCC ATGAAGCTCTAAAGGCCAGTAATGGTGACATCACCCAGGCAGTCAGCCTTCTCACTGATG AAAGAGTTAAAGAGCCCAGCCAAGACACTGTTGCGACAGAGCCATCTGAAGTCGAGGGCA GTGCTGCCAACAAAGAGGTGTTAGCAAAAGTTATAGACCTTACTCATGATAACAAAGATG ATCTTCAGGCTGCCATTGCTTTGAGTCTTTTGGAGTCCCCCAAAATTCAAACTGATGGAA GAGATCTTAACAGGATGCCCGAGGCAACTTCTGCAGAAACTAAACGCTCAAAGAGAAAAC GCTGTGAAGTCTGGGGAGAAAATCCCAATCCCAATGACTGGAGGCGAGTGGATGGCTGGC CAGTTGGGCTGAAAAATGTTGGCAATACGTGTAGGTTTAGTGCTGTTATTCAGTCTCTCT TTCAGTTGCCTGAATTCCGCAGACTCGTCCTCGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGTGGCGGCGGCGGCGGCGGCGGGAGGCTAGTGACCCGCGGAGGGGCGCCCCGGCCA TGACTGCGGAGCTGCAGCAGGACGACGCGGCCGGAGCAGCGGACCGCCACGGCTCGAGCT GCCAAATGCTGTTAAACCAACTGAGAGAAATTACAGGCATTCAGGACCCTTCTTTTCTCC ATGAAGCTCTAAAGGCCAGTAATGGTGACATCACCCAGGCAGTCAGCCTTCTCACTGATG AAAGAGTTAAAGAGCCCAGCCAAGACACTGTTGCGACAGAGCCATCTGAAGTCGAGGGCA GTGCTGCCAACAAAGAGGTGTTAGCAAAAGTTATAGACCTTACTCATGATAACAAAGATG ATCTTCAGGCTGCCATTGCTTTGAGTCTTTTGGAGTCCCCCAAAATTCAAACTGATGGAA GAGATCTTAACAGGATGCCCGAGGCAACTTCTGCAGAAACTAAACGCTCAAAGAGAAAAC GCTGTGAAGTCTGGGGAGAAAATCCCAATCCCAATGACTGGAGGCGAGTGGATGGCTGGC CAGTTGGGCTGAAAAATGTTGGCAATACGTGTAGGTTTAGTGCTGTTATTCAGTCTCTCT TTCAGTTGCCTGAATTCCGCAGACTCGTCCTCGGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chr15 (10811525-10811410) | |
| 1-116, gnl|dasNov1|scaffold_45413 (1406-1504) | |
| 1-116, gnl|echTel1|scaffold_60914 (188-88) | |
| 1-116, gnl|hg17|chr11 (113251366-113251467) | |
| 1-116, gnl|Hg17|chr11 (113251492-113251377) | |
| 1-116, gnl|mm7|chr9 (48957666-48957570) | |
| 1-116, gnl|Mm7|chr9 (48957528-48957658) | |
| 1-116, gnl|monDom2|scaffold_2 (127036289-127036132) | |
| 1-116, gnl|oryCun1|scaffold_199188 (154141-154040) | |
| 1-116, gnl|panTro1|chr9 (115254499-115254600) | |
| 1-116, gnl|rheMac2|chr14 (112350042-112350143) | |
| 1-116, gnl|rn3|chr8 (52264763-52264669) | |
| 193-335, gnl|bosTau2|chr15 (10791703-10791563) | |
| 193-335, gnl|Hg17|chr11 (113228567-113228419) | |
| 193-335, gnl|Mm7|chr9 (48973627-48973768) | |
| 432-593, gnl|bosTau2|chr15 (10781009-10780848) | |
| 432-593, gnl|canFam2|chr5 (22455640-22455535) | |
| 432-593, gnl|danRer3|chr21 (16105170-16105281) | |
| 432-593, gnl|dasNov1|scaffold_10172 (102202-102314) | |
| 432-593, gnl|echTel1|scaffold_103722 (1199-1088) | |
| 432-593, gnl|fr1|chrUn (7764678-7764567) | |
| 432-593, gnl|galGal2|chr24 (4314774-4314879) | |
| 432-593, gnl|hg17|chr11 (113216529-113216640) | |
| 432-593, gnl|Hg17|chr11 (113216691-113216530) | |
| 432-593, gnl|loxAfr1|scaffold_46213 (9733-9838) | |
| 432-593, gnl|mm7|chr9 (48976106-48975995) | |
| 432-593, gnl|Mm7|chr9 (48975942-48976103) | |
| 432-593, gnl|monDom2|scaffold_2 (127066747-127066636) | |
| 432-593, gnl|oryCun1|scaffold_118613 (8161-8266) | |
| 432-593, gnl|panTro1|chr9 (115219519-115219630) | |
| 432-593, gnl|rheMac2|chr14 (112314145-112314256) | |
| 432-593, gnl|rn3|chr8 (52283358-52283247) | |
| 432-593, gnl|tetNig1|chrUn_random (29404103-29404214) | |
| 432-593, gnl|xenTro1|scaffold_300 (449269-449164) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chr15 (10811525-10811410) | |
| 1-116, gnl|dasNov1|scaffold_45413 (1406-1504) | |
| 1-116, gnl|echTel1|scaffold_60914 (188-88) | |
| 1-116, gnl|hg17|chr11 (113251366-113251467) | |
| 1-116, gnl|Hg17|chr11 (113251492-113251377) | |
| 1-116, gnl|mm7|chr9 (48957666-48957570) | |
| 1-116, gnl|Mm7|chr9 (48957528-48957658) | |
| 1-116, gnl|monDom2|scaffold_2 (127036289-127036132) | |
| 1-116, gnl|oryCun1|scaffold_199188 (154141-154040) | |
| 1-116, gnl|panTro1|chr9 (115254499-115254600) | |
| 1-116, gnl|rheMac2|chr14 (112350042-112350143) | |
| 1-116, gnl|rn3|chr8 (52264763-52264669) | |
| 193-335, gnl|bosTau2|chr15 (10791703-10791563) | |
| 193-335, gnl|Hg17|chr11 (113228567-113228419) | |
| 193-335, gnl|Mm7|chr9 (48973627-48973768) | |
| 432-593, gnl|bosTau2|chr15 (10781009-10780848) | |
| 432-593, gnl|canFam2|chr5 (22455640-22455535) | |
| 432-593, gnl|danRer3|chr21 (16105170-16105281) | |
| 432-593, gnl|dasNov1|scaffold_10172 (102202-102314) | |
| 432-593, gnl|echTel1|scaffold_103722 (1199-1088) | |
| 432-593, gnl|fr1|chrUn (7764678-7764567) | |
| 432-593, gnl|galGal2|chr24 (4314774-4314879) | |
| 432-593, gnl|hg17|chr11 (113216529-113216640) | |
| 432-593, gnl|Hg17|chr11 (113216691-113216530) | |
| 432-593, gnl|loxAfr1|scaffold_46213 (9733-9838) | |
| 432-593, gnl|mm7|chr9 (48976106-48975995) | |
| 432-593, gnl|Mm7|chr9 (48975942-48976103) | |
| 432-593, gnl|monDom2|scaffold_2 (127066747-127066636) | |
| 432-593, gnl|oryCun1|scaffold_118613 (8161-8266) | |
| 432-593, gnl|panTro1|chr9 (115219519-115219630) | |
| 432-593, gnl|rheMac2|chr14 (112314145-112314256) | |
| 432-593, gnl|rn3|chr8 (52283358-52283247) | |
| 432-593, gnl|tetNig1|chrUn_random (29404103-29404214) | |
| 432-593, gnl|xenTro1|scaffold_300 (449269-449164) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.150376) | |
| hlv (0.139256) | |
| ldo (0.0970026) |