Non-Coding RNA Search

Ss1.1-risp09_m17.5

Sequence:


               
               ATATGAGCTTACTTAACTTTGAACAAGTTTTAGAAGTTTAAATTTGATTTCAGAGAAAAT
GGAAAAATGAAACAATGTTAGGTTATTTAAAATATGTTTAAATGAGGAAAGTGTAAGGTC
TACTTTTTGAAAAATGCAAATGAAGAGAGGAAAAAGGCATTCTAGAAACTGCATTCTCAT
AATTCCTTTTCCTTTTGATTGTCACTAAATTGGCCTAATTCATGATCCCAGGGCGGGGGA
CAATTGTGGAACCTCTCTTATTTTTGCTGAGTCATCATGAATAATAATAGAGTATTAATT
TAATTTTATTCTTTGGAAATTTAATTGGTCACATTAATAACAACATCTGCTATCACTTAT
CTTTAAAAACTAACCAAAAACATGGCAAGCTCCGAAACATCAGAAGTTCACACTAGCTGT
AAGAATATGGTTTTAATTTTCTTTTGAATGAAGAGGATAGAAAATAAAATCACTTTGCAT
TGTTAATTTGTAAATTGAGTTGGAACTAATTTGAATCTAGTGTCTCATTAACTTCATCTT
TCTAGGGACTCATTCCCTGTTTACTTGCCAAACCTAGACTGTTTGGCCAAATATGTTGCT
GTGAAGATCTTAAAGGCTCCTCTTCTTTGTTTTTTATTTAACATGCTCGCTCTCAAACTA
AGCTTTTTGTGTTTTGATTTGGTTTCATTTGTAACTGTGTCCCAGTGACCAAATTCCACT
TGACTTAGCTACTCATCCTTTTTTTTTCTGTCCAAGCAAACCTAAGTGTTACACCGGTTT
TTTAGTGTTACAAAGAAGAGTCCATTAGCCAAAGGCAGTGAAATTATTGAGATGCGCAGA
ACCTAAAATCCCGTCTCCCATTTCAGACCTGAAGCTGGCTGGCACACATGAAAAGGCTAG
AATCACTTCATTTTAATATAGAGAAGAGAATACTTCACTTATTTTCATTAGGTTACTAAC
TGGCAGGAGAGGTGATGAGCCACTGCTTTTGTTTTTTCAATGAAACACTTTTACCCTTTT
ATTTCAATGTAACTTATGTTCTTATTTTTAGAGTTCAATCATTATTTCTGTAATTATCTC
CAATTTCCATATGTTTATTACTGAATCACTGAAAAACTCATCTTTAAAGTTCATACCGTT
CCATTCTATCTCATAAGTGTTAAATGTATGATAAAAGTACATATTTTAAGTTGTTTTCAG
TGCCTGGATATAGCTGCAATAAAAGCACTAATTTGTGGGTATTTAAGAAAAGCTGGAGAA
TAAACTCATACTTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGAGCTTACTTAACTTTGAACAAGTTTTAGAAGTTTAAATTTGATTTCAGAGAAAAT
GGAAAAATGAAACAATGTTAGGTTATTTAAAATATGTTTAAATGAGGAAAGTGTAAGGTC
TACTTTTTGAAAAATGCAAATGAAGAGAGGAAAAAGGCATTCTAGAAACTGCATTCTCAT
AATTCCTTTTCCTTTTGATTGTCACTAAATTGGCCTAATTCATGATCCCAGGGCGGGGGA
CAATTGTGGAACCTCTCTTATTTTTGCTGAGTCATCATGAATAATAATAGAGTATTAATT
TAATTTTATTCTTTGGAAATTTAATTGGTCACATTAATAACAACATCTGCTATCACTTAT
CTTTAAAAACTAACCAAAAACATGGCAAGCTCCGAAACATCAGAAGTTCACACTAGCTGT
AAGAATATGGTTTTAATTTTCTTTTGAATGAAGAGGATAGAAAATAAAATCACTTTGCAT
TGTTAATTTGTAAATTGAGTTGGAACTAATTTGAATCTAGTGTCTCATTAACTTCATCTT
TCTAGGGACTCATTCCCTGTTTACTTGCCAAACCTAGACTGTTTGGCCAAATATGTTGCT
GTGAAGATCTTAAAGGCTCCTCTTCTTTGTTTTTTATTTAACATGCTCGCTCTCAAACTA
AGCTTTTTGTGTTTTGATTTGGTTTCATTTGTAACTGTGTCCCAGTGACCAAATTCCACT
TGACTTAGCTACTCATCCTTTTTTTTTCTGTCCAAGCAAACCTAAGTGTTACACCGGTTT
TTTAGTGTTACAAAGAAGAGTCCATTAGCCAAAGGCAGTGAAATTATTGAGATGCGCAGA
ACCTAAAATCCCGTCTCCCATTTCAGACCTGAAGCTGGCTGGCACACATGAAAAGGCTAG
AATCACTTCATTTTAATATAGAGAAGAGAATACTTCACTTATTTTCATTAGGTTACTAAC
TGGCAGGAGAGGTGATGAGCCACTGCTTTTGTTTTTTCAATGAAACACTTTTACCCTTTT
ATTTCAATGTAACTTATGTTCTTATTTTTAGAGTTCAATCATTATTTCTGTAATTATCTC
CAATTTCCATATGTTTATTACTGAATCACTGAAAAACTCATCTTTAAAGTTCATACCGTT
CCATTCTATCTCATAAGTGTTAAATGTATGATAAAAGTACATATTTTAAGTTGTTTTCAG
TGCCTGGATATAGCTGCAATAAAAGCACTAATTTGTGGGTATTTAAGAAAAGCTGGAGAA
TAAACTCATACTTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-360, gnl|bosTau2|chr19 (43566022-43566373)
               

               
               1-360, gnl|Hg17|chr17 (62766385-62765999)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-360, gnl|bosTau2|chr19 (43566022-43566373)
               

               
               1-360, gnl|Hg17|chr17 (62766385-62765999)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               vin (0.997672)
               

               
               ski (0.440205)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               ski (0.440205)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-360, gnl\|bosTau2\|chr19 (43566022-43566373)
	1-360, gnl\|Hg17\|chr17 (62766385-62765999)

	vin (0.997672)
	ski (0.440205)
	bla (0.373042)
	sag (0.36543)
	sme (0.305437)
	thg (0.253582)
	spc (0.226732)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	ssp (0.13552)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	ecc (0.115035)