Ss1.1-risp10_b4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGAAGAATATGAGGAGGTGGTGGAGTATTACACGGAGGAGACAGTCTATGAAGAGGTAC CAGGGGAGACAATAACAGAAGTCTATGAAACTACGACCACAAGGACATCTGGCTATGAGC AATCAGATACTTCCCAACCAGCAGTGGCACAGCCAATGCCCTCAAAGCCGGTGGAGAGGA AGAAAGTTATTCGAAAGAAAGTGGACCCTTCAAAGTTCATGACTCCCTACATTGCACACA GTCAGAAAATGCAGGATCTCTTTAGCACAAATAAATACAAGAAGAACTATGAAAAAGCAA AAGGAAAGCCATATGCCGTCACCACAGATACCCCAGAACTTCGCAGAATCAAGAAAGTAC AAGATCAACTCAGTGAGGTTAAGTATCGAATTGATGGCGATGTTGCTAAAACTATTTGTC ATGTTGATGAAAAAGCAAAGGACATTGAACATGCAAAGAAAGTGTCGCAGCAAGTCAGTA AGGTTTTATATAAGCAGAACTGGGAAGACACCAAGGATAAGTACCTGCTTCCTCCTGATG CCCCTGAACTTGTCCAGGCCATCAAGAACACAGCCATGTTCAGTAAGAAACTGTACACTG AAGACTGGGAAGCTGACAAAAGTTTGTTTTATCCGTATAACGATAGCCCAGAGCTGAGGA GGGTCGCCCAAGCCCAGAAAGCTCTCAGTGATATTGCCTACAAAAAAGGTCATGCTGAAC AGCAAACTCAATTCACGTCTCTGCCAGATCCTCCAGATATAGAATTTGCCAAGAAAGTGA CCAATCAAGTGAGCAAGCAAAAATATAAGGAAGACTATGAAAATAAAATCAAAGGCAAAT GGAGTGAGACCCCTTGCTTTGAAATTGCAACTGCCAGAATGAATGCAAAGAACATCAGCA CAAGGAAATACCAGGAAGATTTTGAGAATATGAAAGACCAGATCTACTTCATGCAGACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGAAGAATATGAGGAGGTGGTGGAGTATTACACGGAGGAGACAGTCTATGAAGAGGTAC CAGGGGAGACAATAACAGAAGTCTATGAAACTACGACCACAAGGACATCTGGCTATGAGC AATCAGATACTTCCCAACCAGCAGTGGCACAGCCAATGCCCTCAAAGCCGGTGGAGAGGA AGAAAGTTATTCGAAAGAAAGTGGACCCTTCAAAGTTCATGACTCCCTACATTGCACACA GTCAGAAAATGCAGGATCTCTTTAGCACAAATAAATACAAGAAGAACTATGAAAAAGCAA AAGGAAAGCCATATGCCGTCACCACAGATACCCCAGAACTTCGCAGAATCAAGAAAGTAC AAGATCAACTCAGTGAGGTTAAGTATCGAATTGATGGCGATGTTGCTAAAACTATTTGTC ATGTTGATGAAAAAGCAAAGGACATTGAACATGCAAAGAAAGTGTCGCAGCAAGTCAGTA AGGTTTTATATAAGCAGAACTGGGAAGACACCAAGGATAAGTACCTGCTTCCTCCTGATG CCCCTGAACTTGTCCAGGCCATCAAGAACACAGCCATGTTCAGTAAGAAACTGTACACTG AAGACTGGGAAGCTGACAAAAGTTTGTTTTATCCGTATAACGATAGCCCAGAGCTGAGGA GGGTCGCCCAAGCCCAGAAAGCTCTCAGTGATATTGCCTACAAAAAAGGTCATGCTGAAC AGCAAACTCAATTCACGTCTCTGCCAGATCCTCCAGATATAGAATTTGCCAAGAAAGTGA CCAATCAAGTGAGCAAGCAAAAATATAAGGAAGACTATGAAAATAAAATCAAAGGCAAAT GGAGTGAGACCCCTTGCTTTGAAATTGCAACTGCCAGAATGAATGCAAAGAACATCAGCA CAAGGAAATACCAGGAAGATTTTGAGAATATGAAAGACCAGATCTACTTCATGCAGACTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 67-269, gnl|bosTau2|chr2 (29580691-29580893) | |
| 67-269, gnl|Hg17|chr2 (152409930-152409713) | |
| 67-269, gnl|Mm7|chr2 (52336231-52336029) | |
| 481-587, gnl|bosTau2|chr2 (29584218-29584324) | |
| 481-587, gnl|canFam2|chr19 (55939202-55939343) | |
| 481-587, gnl|danRer3|chr9 (14940254-14940122) | |
| 481-587, gnl|dasNov1|scaffold_54700 (3798-3938) | |
| 481-587, gnl|echTel1|scaffold_279087 (70615-70480) | |
| 481-587, gnl|fr1|chrUn (158667870-158667984) | |
| 481-587, gnl|galGal2|chr7 (35936999-35937116) | |
| 481-587, gnl|hg17|chr2 (152406256-152406395) | |
| 481-587, gnl|Hg17|chr2 (152406388-152406282) | |
| 481-587, gnl|loxAfr1|scaffold_239 (161826-161961) | |
| 481-587, gnl|mm7|chr2 (52332991-52333121) | |
| 481-587, gnl|Mm7|chr2 (52333114-52333008) | |
| 481-587, gnl|monDom2|scaffold_2 (42719363-42719497) | |
| 481-587, gnl|oryCun1|scaffold_191929 (3406-3547) | |
| 481-587, gnl|panTro1|chr13 (41464553-41464692) | |
| 481-587, gnl|rheMac2|chr12 (15395831-15395970) | |
| 481-587, gnl|rn3|chr3 (33720650-33720780) | |
| 481-587, gnl|tetNig1|chr2 (18032592-18032706) | |
| 481-587, gnl|xenTro1|scaffold_524 (35565-35695) | |
| 688-810, gnl|bosTau2|chr2 (29590810-29590933) | |
| 688-810, gnl|Hg17|chr2 (152399547-152399424) | |
| 688-810, gnl|Mm7|chr2 (52327054-52326931) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-269, gnl|bosTau2|chr2 (29580691-29580893) | |
| 67-269, gnl|Hg17|chr2 (152409930-152409713) | |
| 67-269, gnl|Mm7|chr2 (52336231-52336029) | |
| 481-587, gnl|bosTau2|chr2 (29584218-29584324) | |
| 481-587, gnl|canFam2|chr19 (55939202-55939343) | |
| 481-587, gnl|danRer3|chr9 (14940254-14940122) | |
| 481-587, gnl|dasNov1|scaffold_54700 (3798-3938) | |
| 481-587, gnl|echTel1|scaffold_279087 (70615-70480) | |
| 481-587, gnl|fr1|chrUn (158667870-158667984) | |
| 481-587, gnl|galGal2|chr7 (35936999-35937116) | |
| 481-587, gnl|hg17|chr2 (152406256-152406395) | |
| 481-587, gnl|Hg17|chr2 (152406388-152406282) | |
| 481-587, gnl|loxAfr1|scaffold_239 (161826-161961) | |
| 481-587, gnl|mm7|chr2 (52332991-52333121) | |
| 481-587, gnl|Mm7|chr2 (52333114-52333008) | |
| 481-587, gnl|monDom2|scaffold_2 (42719363-42719497) | |
| 481-587, gnl|oryCun1|scaffold_191929 (3406-3547) | |
| 481-587, gnl|panTro1|chr13 (41464553-41464692) | |
| 481-587, gnl|rheMac2|chr12 (15395831-15395970) | |
| 481-587, gnl|rn3|chr3 (33720650-33720780) | |
| 481-587, gnl|tetNig1|chr2 (18032592-18032706) | |
| 481-587, gnl|xenTro1|scaffold_524 (35565-35695) | |
| 688-810, gnl|bosTau2|chr2 (29590810-29590933) | |
| 688-810, gnl|Hg17|chr2 (152399547-152399424) | |
| 688-810, gnl|Mm7|chr2 (52327054-52326931) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.300752) | |
| ldo (0.194005) | |
| ste (0.135208) |