Non-Coding RNA Search

Ss1.1-risp11_e19.5

Sequence:


               
               CAAACTGTGGCACCCCAAAGCAAAGGATAACCATCCTCCAAAATGCTTCCATAACACCAG
TGAAATCCAAAACCTCTGCTGAAGGCCTTATGAATTTAGAGCAAGGCATGTCCCCGGTTA
CCATGGCAGCCTTTGCCAGGGCACAGACACCAGAGTCTTGTGGTTCCATAACTCCAGAAA
GAACAATGTCACCTATTCAAGTTTTGGCTGTTACTGGTTCAGTTAGCTCCCCTGAGCAGG
GGCGCTCTCCAGAGCCAATAGAAATCAGTGCCAAGCACGCGATTTTCAGAGTCTCCCCTG
ACCGGCAGTCATCATGGCAGTTTCAGCGTTCAAATAGTAACAGTTCAAGTGTGATAACTA
CTGAGGATAATAAAATCCACATTCACTTAGGAAGTCCTTACATGCAAGCTGTAGCCAGCC
CCGTGAGACCTGCTAGCCCTTCAACACCACTGCAGGATAACCGAACTCAAGGCTTAACTA
ATGGGGCACTAAACAAAACAACCAATAAAGTCACCAGCAGTATTACTATCACACCAACAG
CTACACCTCTTCCTCGACAATCACAAATTACAGTAAGTAATATATATAACTGATGACCCT
CACCCTGATCCAGTTTATACTGACAGCATTGCAAGGAACTCAGTCCTTTTTTATAATGAT
CCCTCCACATCCCCCAAAAGATGACTGAACTTGTACTTTGGGAAAGTTTATGCATGAACT
ATCCAAGAGTATCTGAAACTAACTGTTGCCTGCATAGTCATATCAAGTGTGCACTTACTG
TATATCTTTTCATTTACATATCTGTATGGAAAATATTTAGTCTGCACTTGTATAAATACA
TTTTTATGTATTTTCATTTCCATAACTCACATTAATTTGATTGCAACTTGTTTTGGTGAA
ATACTTTAACATCATAAAGCAGTAAATTGTTATTTTTACCATTGCTTGCTGAATTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTGTGGCACCCCAAAGCAAAGGATAACCATCCTCCAAAATGCTTCCATAACACCAG
TGAAATCCAAAACCTCTGCTGAAGGCCTTATGAATTTAGAGCAAGGCATGTCCCCGGTTA
CCATGGCAGCCTTTGCCAGGGCACAGACACCAGAGTCTTGTGGTTCCATAACTCCAGAAA
GAACAATGTCACCTATTCAAGTTTTGGCTGTTACTGGTTCAGTTAGCTCCCCTGAGCAGG
GGCGCTCTCCAGAGCCAATAGAAATCAGTGCCAAGCACGCGATTTTCAGAGTCTCCCCTG
ACCGGCAGTCATCATGGCAGTTTCAGCGTTCAAATAGTAACAGTTCAAGTGTGATAACTA
CTGAGGATAATAAAATCCACATTCACTTAGGAAGTCCTTACATGCAAGCTGTAGCCAGCC
CCGTGAGACCTGCTAGCCCTTCAACACCACTGCAGGATAACCGAACTCAAGGCTTAACTA
ATGGGGCACTAAACAAAACAACCAATAAAGTCACCAGCAGTATTACTATCACACCAACAG
CTACACCTCTTCCTCGACAATCACAAATTACAGTAAGTAATATATATAACTGATGACCCT
CACCCTGATCCAGTTTATACTGACAGCATTGCAAGGAACTCAGTCCTTTTTTATAATGAT
CCCTCCACATCCCCCAAAAGATGACTGAACTTGTACTTTGGGAAAGTTTATGCATGAACT
ATCCAAGAGTATCTGAAACTAACTGTTGCCTGCATAGTCATATCAAGTGTGCACTTACTG
TATATCTTTTCATTTACATATCTGTATGGAAAATATTTAGTCTGCACTTGTATAAATACA
TTTTTATGTATTTTCATTTCCATAACTCACATTAATTTGATTGCAACTTGTTTTGGTGAA
ATACTTTAACATCATAAAGCAGTAAATTGTTATTTTTACCATTGCTTGCTGAATTTTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.512546
               

               
               400-519, - strand, RNAz p=0.890864

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.512546
               

               
               400-519, - strand, RNAz p=0.890864

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               315-435, + strand, RNAmicro p=0.917427

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               315-435, + strand, RNAmicro p=0.917427

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-539, gnl|bosTau2|chr1 (28161215-28160677)
               

               
               1-539, gnl|Hg17|chr3 (101050400-101049862)
               

               
               1-539, gnl|Mm7|chr16 (57433379-57433917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-539, gnl|bosTau2|chr1 (28161215-28160677)
               

               
               1-539, gnl|Hg17|chr3 (101050400-101049862)
               

               
               1-539, gnl|Mm7|chr16 (57433379-57433917)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               aor (1.17165)
               

               
               tbr (0.616713)
               

               
               ski (0.29347)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.17165)
               

               
               tbr (0.616713)
               

               
               ski (0.29347)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	1-119, - strand, RNAz p=0.512546
	400-519, - strand, RNAz p=0.890864

	1-539, gnl\|bosTau2\|chr1 (28161215-28160677)
	1-539, gnl\|Hg17\|chr3 (101050400-101049862)
	1-539, gnl\|Mm7\|chr16 (57433379-57433917)

	aor (1.17165)
	tbr (0.616713)
	ski (0.29347)
	ste (0.270416)
	bla (0.248694)
	nms (0.213858)
	isp (0.150376)
	bfe (0.149858)
	pty (0.142714)
	sug (0.127291)
	eru (0.120048)