Non-Coding RNA Search

Ss1.1-risp11_m15.5

Sequence:


               
               CTTGAATATTGCTTTGATAGCTGCTATCACAATCCCTTTTTAAGGCAATTTTAATCTTTC
GTAATTACATCTCAATTAACGGCTGGAAAGTATGTAGTAAGACAAATTAAATTTTTTATC
GTCAAGGGTTTTTATTTTGTTTTATTTTATTTTATTTTGGTCACAGGAGTAGATAGTGAA
TTCAAGTCTAACTTCATCGTAGCTATGGTGCTCACTAAACAAAGACGACTATTAGCTAGT
TCTTTGTTTTTATTCAAAAAGAATATCCCTTTCATAGTTTGTGCCTTCTGTGAGCATAAC
TTTTTAGTATGTGTGTCTATCCCTTTAGTAATCACAACATGTTTGGATTAGGGATTCCCC
ACGTCTTCTTCCTCTTGCAGGTTTTAAATTTCCAACCTGTTAAAGTGAATTTGTGGACCA
AATTCCCAAGGACGACTTCTTGTGTAGTCAGTTCTCGCACAGTGTGTTTGATAAACAAAC
TCACAAAGTGAATTTCTAGAAATGTTTTTAGTATTTATCAAATGACTGACCATTTGCTAC
AGAAAAGTAAGAAAACTTGCAGGCTTTGTTTTACTACAACCTGTACAAAGCCGTGTGACA
GGGCATAGTCTTTGCTCCCAGGGATTGGGATGGAGGCACTGGGGGTTCAGAGCCTGGAGG
AATCGTCAGCTTTATTCTGACATAAACCTGAGGGTGAGGGGCAAAGATCACATCTGGTGA
TCGGTGTTCCTTATGCTCTGTTGTGTTGTGTTCTTAATGATTACACTGATCTTAGCAAAA
TTCCTATCAGGGGAACCTTGAAATGCATGTACCTATTAGATTGATGGTAAAATGATTCGG
TTAGTGTTTTGGTAATACTTCAAAGGTTTTTTTTGTTTGTTTGTTTTCTAGACTAAGGAT
AGGGTTAGTACAAAGCAGAAGAAATCTAATGGCTAAATTTCCCATTTGTATATTATTTTT
CTTGAATTTTTTTTTCATAGTTGTTTAAGATTTAAAAATCATTGCACTTTGGTCAGAAAA
ATAATAAATTTATCTTATAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAATATTGCTTTGATAGCTGCTATCACAATCCCTTTTTAAGGCAATTTTAATCTTTC
GTAATTACATCTCAATTAACGGCTGGAAAGTATGTAGTAAGACAAATTAAATTTTTTATC
GTCAAGGGTTTTTATTTTGTTTTATTTTATTTTATTTTGGTCACAGGAGTAGATAGTGAA
TTCAAGTCTAACTTCATCGTAGCTATGGTGCTCACTAAACAAAGACGACTATTAGCTAGT
TCTTTGTTTTTATTCAAAAAGAATATCCCTTTCATAGTTTGTGCCTTCTGTGAGCATAAC
TTTTTAGTATGTGTGTCTATCCCTTTAGTAATCACAACATGTTTGGATTAGGGATTCCCC
ACGTCTTCTTCCTCTTGCAGGTTTTAAATTTCCAACCTGTTAAAGTGAATTTGTGGACCA
AATTCCCAAGGACGACTTCTTGTGTAGTCAGTTCTCGCACAGTGTGTTTGATAAACAAAC
TCACAAAGTGAATTTCTAGAAATGTTTTTAGTATTTATCAAATGACTGACCATTTGCTAC
AGAAAAGTAAGAAAACTTGCAGGCTTTGTTTTACTACAACCTGTACAAAGCCGTGTGACA
GGGCATAGTCTTTGCTCCCAGGGATTGGGATGGAGGCACTGGGGGTTCAGAGCCTGGAGG
AATCGTCAGCTTTATTCTGACATAAACCTGAGGGTGAGGGGCAAAGATCACATCTGGTGA
TCGGTGTTCCTTATGCTCTGTTGTGTTGTGTTCTTAATGATTACACTGATCTTAGCAAAA
TTCCTATCAGGGGAACCTTGAAATGCATGTACCTATTAGATTGATGGTAAAATGATTCGG
TTAGTGTTTTGGTAATACTTCAAAGGTTTTTTTTGTTTGTTTGTTTTCTAGACTAAGGAT
AGGGTTAGTACAAAGCAGAAGAAATCTAATGGCTAAATTTCCCATTTGTATATTATTTTT
CTTGAATTTTTTTTTCATAGTTGTTTAAGATTTAAAAATCATTGCACTTTGGTCAGAAAA
ATAATAAATTTATCTTATAAATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               630-748, + strand, RNAz p=0.936074

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               630-748, + strand, RNAz p=0.936074

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC014961, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC014961, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr27 (16855701-16856718)
               

               
               1-1044, gnl|Hg17|chr1 (47554469-47555471)
               

               
               1-1044, gnl|Mm7|chr4 (114338123-114337122)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr27 (16855701-16856718)
               

               
               1-1044, gnl|Hg17|chr1 (47554469-47555471)
               

               
               1-1044, gnl|Mm7|chr4 (114338123-114337122)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               cmu (0.931966)
               

               
               liv (0.585137)
               

               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               ski (0.440205)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.931966)
               

               
               liv (0.585137)
               

               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               ski (0.440205)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-1044, gnl\|bosTau2\|chr27 (16855701-16856718)
	1-1044, gnl\|Hg17\|chr1 (47554469-47555471)
	1-1044, gnl\|Mm7\|chr4 (114338123-114337122)

	cmu (0.931966)
	liv (0.585137)
	lin (0.582411)
	sin (0.524843)
	ski (0.440205)
	mgm (0.360685)
	sto (0.359648)
	rec (0.346141)
	csk (0.281492)
	lyg (0.266205)
	ret (0.257467)
	tra (0.246184)
	cbe (0.239234)
	mgp (0.230681)
	spc (0.226732)
	aor (0.195274)
	duo (0.172801)
	cut (0.169924)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	hlv (0.139256)
	che (0.136314)
	kid (0.129735)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)