Ss1.1-risp11_n15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCCGCTCCTGATCTGCGCAGATCCTGCTTAGTCCCCGACCTTGCAGGTTAATTTTCTT TGCCCTCTAGGCTCGAGGCCTCTGTCGCTACCATGCTTCGCCAGATCATCACGCAGGCCA AGAAGCATCCTAGCTTGATCCCCCTCTTTGTATTTATTGGTGCTGGAGGTACTGGAGCAG CACTGTATGTCACACGCCTGGCATTGTTCAATCCAGATGTCTGTTGGGACAGGAAGAATA ACCCAGAACCCTGGAATAAACTGGGTCCCAATGATCAATACAAGTTCTTTGCGGTGAATG TAGATTACAGCAAACTGAAGAAAGAAGGTCCAGACTTCTAAATGAAATGTTTCACTATAA AGCTGCTTAGAATGAAGGTCTTCCAGAAGCCATCCGCACAATTTTCCACTTAACCGGGAA ATATTTCCCCTCTAAATGCACGAAATCATGTTGTATTGTATTGGGGTTTACACTGATTAA TAAATAATCTGAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTATAAC TTAAGGTATAGGAAATAAACTATTAGAATTTAAGGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCCGCTCCTGATCTGCGCAGATCCTGCTTAGTCCCCGACCTTGCAGGTTAATTTTCTT TGCCCTCTAGGCTCGAGGCCTCTGTCGCTACCATGCTTCGCCAGATCATCACGCAGGCCA AGAAGCATCCTAGCTTGATCCCCCTCTTTGTATTTATTGGTGCTGGAGGTACTGGAGCAG CACTGTATGTCACACGCCTGGCATTGTTCAATCCAGATGTCTGTTGGGACAGGAAGAATA ACCCAGAACCCTGGAATAAACTGGGTCCCAATGATCAATACAAGTTCTTTGCGGTGAATG TAGATTACAGCAAACTGAAGAAAGAAGGTCCAGACTTCTAAATGAAATGTTTCACTATAA AGCTGCTTAGAATGAAGGTCTTCCAGAAGCCATCCGCACAATTTTCCACTTAACCGGGAA ATATTTCCCCTCTAAATGCACGAAATCATGTTGTATTGTATTGGGGTTTACACTGATTAA TAAATAATCTGAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTATAAC TTAAGGTATAGGAAATAAACTATTAGAATTTAAGGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 30-519, gnl|bosTau2|chr11 (37612790-37613280) | |
| 30-519, gnl|canFam2|chr21 (21017563-21017950) | |
| 30-519, gnl|canFam2|chr30 (35514111-35514575) | |
| 30-519, gnl|dasNov1|scaffold_113102 (7719-7255) | |
| 30-519, gnl|dasNov1|scaffold_161403 (2952-2568) | |
| 30-519, gnl|echTel1|scaffold_55546 (1974-1510) | |
| 30-519, gnl|echTel1|scaffold_55546 (1569-1954) | |
| 30-519, gnl|Hg17|chr3 (104442459-104442940) | |
| 30-519, gnl|hg17|chr8 (65629171-65629633) | |
| 30-519, gnl|hg17|chrX (70694817-70695206) | |
| 30-519, gnl|loxAfr1|scaffold_85499 (7468-7926) | |
| 30-519, gnl|loxAfr1|scaffold_85499 (7868-7485) | |
| 30-519, gnl|mm7|chrX (4459750-4459300) | |
| 30-519, gnl|mm7|chrX (4459347-4459725) | |
| 30-519, gnl|Mm7|chrX (53112697-53112243) | |
| 30-519, gnl|monDom2|scaffold_16 (34998695-34998260) | |
| 30-519, gnl|monDom2|scaffold_16 (34998300-34998675) | |
| 30-519, gnl|oryCun1|scaffold_98064 (4429-3973) | |
| 30-519, gnl|oryCun1|scaffold_98064 (4025-4409) | |
| 30-519, gnl|panTro1|chr7 (67635277-67635739) | |
| 30-519, gnl|panTro1|chrX (73057087-73056698) | |
| 30-519, gnl|rheMac2|chr8 (67147542-67148008) | |
| 30-519, gnl|rheMac2|chrX (70606913-70607300) | |
| 30-519, gnl|rn3|chr18 (1396351-1396706) | |
| 30-519, gnl|rn3|chr3 (31537797-31538224) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-519, gnl|bosTau2|chr11 (37612790-37613280) | |
| 30-519, gnl|canFam2|chr21 (21017563-21017950) | |
| 30-519, gnl|canFam2|chr30 (35514111-35514575) | |
| 30-519, gnl|dasNov1|scaffold_113102 (7719-7255) | |
| 30-519, gnl|dasNov1|scaffold_161403 (2952-2568) | |
| 30-519, gnl|echTel1|scaffold_55546 (1974-1510) | |
| 30-519, gnl|echTel1|scaffold_55546 (1569-1954) | |
| 30-519, gnl|Hg17|chr3 (104442459-104442940) | |
| 30-519, gnl|hg17|chr8 (65629171-65629633) | |
| 30-519, gnl|hg17|chrX (70694817-70695206) | |
| 30-519, gnl|loxAfr1|scaffold_85499 (7468-7926) | |
| 30-519, gnl|loxAfr1|scaffold_85499 (7868-7485) | |
| 30-519, gnl|mm7|chrX (4459750-4459300) | |
| 30-519, gnl|mm7|chrX (4459347-4459725) | |
| 30-519, gnl|Mm7|chrX (53112697-53112243) | |
| 30-519, gnl|monDom2|scaffold_16 (34998695-34998260) | |
| 30-519, gnl|monDom2|scaffold_16 (34998300-34998675) | |
| 30-519, gnl|oryCun1|scaffold_98064 (4429-3973) | |
| 30-519, gnl|oryCun1|scaffold_98064 (4025-4409) | |
| 30-519, gnl|panTro1|chr7 (67635277-67635739) | |
| 30-519, gnl|panTro1|chrX (73057087-73056698) | |
| 30-519, gnl|rheMac2|chr8 (67147542-67148008) | |
| 30-519, gnl|rheMac2|chrX (70606913-70607300) | |
| 30-519, gnl|rn3|chr18 (1396351-1396706) | |
| 30-519, gnl|rn3|chr3 (31537797-31538224) |
| Expressed library(ies): 79 entry(ies) | More info |
| Expressed library(ies): 79 entry(ies) | Help | Less info |
| che (6.40676) | |
| nms (4.91873) | |
| hea (4.70348) | |
| ssp (4.47215) | |
| mas (4.2061) | |
| hlv (4.17769) | |
| sme (2.13806) | |
| hyp (1.99971) | |
| cst (1.96051) | |
| cki (1.81758) | |
| isp (1.80451) | |
| bfe (1.79829) | |
| cbe (1.67464) | |
| cbr (1.66368) | |
| fcc (1.58228) | |
| fhi (1.5262) | |
| fce (1.35796) | |
| vin (1.33023) | |
| nep (1.28747) | |
| amn (1.25313) | |
| ton (1.2285) | |
| cte (1.17096) | |
| fbs (1.05208) | |
| nlu (0.958405) | |
| kid (0.908147) | |
| sto (0.899119) | |
| cut (0.849618) | |
| pty (0.713572) | |
| ebs (0.709807) | |
| eje (0.691836) | |
| ece (0.687916) | |
| spc (0.680195) | |
| nmm (0.664011) | |
| ute (0.663922) | |
| fty (0.527519) | |
| ill (0.526778) | |
| duo (0.518403) | |
| thg (0.507164) | |
| ese (0.506009) | |
| bla (0.497389) | |
| cje (0.495704) | |
| jca (0.45584) | |
| lnt (0.426925) | |
| cmu (0.372787) | |
| cly (0.361925) | |
| eru (0.360144) | |
| ecc (0.345105) | |
| mcp (0.341297) | |
| ctl (0.306138) | |
| eli (0.303628) | |
| cag (0.302389) | |
| csk (0.281492) | |
| nca (0.273748) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| cov (0.264306) | |
| ova (0.258264) | |
| ret (0.257467) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| fco (0.157208) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pla (0.133672) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 79 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (6.40676) | |
| nms (4.91873) | |
| hea (4.70348) | |
| ssp (4.47215) | |
| mas (4.2061) | |
| hlv (4.17769) | |
| sme (2.13806) | |
| hyp (1.99971) | |
| cst (1.96051) | |
| cki (1.81758) | |
| isp (1.80451) | |
| bfe (1.79829) | |
| cbe (1.67464) | |
| cbr (1.66368) | |
| fcc (1.58228) | |
| fhi (1.5262) | |
| fce (1.35796) | |
| vin (1.33023) | |
| nep (1.28747) | |
| amn (1.25313) | |
| ton (1.2285) | |
| cte (1.17096) | |
| fbs (1.05208) | |
| nlu (0.958405) | |
| kid (0.908147) | |
| sto (0.899119) | |
| cut (0.849618) | |
| pty (0.713572) | |
| ebs (0.709807) | |
| eje (0.691836) | |
| ece (0.687916) | |
| spc (0.680195) | |
| nmm (0.664011) | |
| ute (0.663922) | |
| fty (0.527519) | |
| ill (0.526778) | |
| duo (0.518403) | |
| thg (0.507164) | |
| ese (0.506009) | |
| bla (0.497389) | |
| cje (0.495704) | |
| jca (0.45584) | |
| lnt (0.426925) | |
| cmu (0.372787) | |
| cly (0.361925) | |
| eru (0.360144) | |
| ecc (0.345105) | |
| mcp (0.341297) | |
| ctl (0.306138) | |
| eli (0.303628) | |
| cag (0.302389) | |
| csk (0.281492) | |
| nca (0.273748) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| cov (0.264306) | |
| ova (0.258264) | |
| ret (0.257467) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| fco (0.157208) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pla (0.133672) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| med (0.116252) |