Non-Coding RNA Search

Ss1.1-risp11_p23.5.5

Sequence:


               
               ACAATCCGCCAGAGCTGCCGCCCAGTGGGTACCGCGGGGAGCCTGGTGCGAAATTACGCA
GGTAGCGGAGTGCCGCCGCCCCTCTGCCTGATGAGCTGCACCAGAATGATCCAGGTTTTA
GATCCACGGCCTTTGACAAGTTCAGTCATGCCCGTGGATGTGGCCATGAGACTCTGCTTG
GCTCACTCACCACCTCTGAAGAGTTTCCTGGGCCCTTATGATGACTTCCAACGAAGAAAT
TTTGTGAACAAATTAAAGCCTCTGAAGCCGTGTCTCAACATGAAACAGGAAGCCAAATCA
CAGAATGATTGGAAGCCTTCGCACAACCAAGCCAAGAAGCGGGTGGTGTTCGCTGACTCC
AAGGGCCTCTCCCTCACCGCCATTCACGTCTTCTCAGACCTCCCGGAAGAGCCAGTGTGG
GATCTCCAGTTTGACCTCTTGGACCTTAATGATATCTCCTCGGGCTTAAAACGCCACGAA
GAGAAGAACTTGATTTTAGATTTCCCTCAGCCCTCAGCTGATTACTTAAGTTTTCGAAAC
CACTTCCAGAAGAACTTTGTCTGCCTGGAGAACTGCTCTTTGCAAGAGCGAATGGTGACG
GGGACTGTGAAGGTGAAAAATGTGAGCTTTGAGAAGAAGGTTCAGATCCGGATCACTTTT
GATACCTGGCAGAACTACACCGATGTGGACTGCGTCTACATGAAGAATATGTACGGTGGC
TCAGAGAGTGACACTTTCTCGTTTGCCATTGACCTACCCGCTGTGATCCCAACAAAGGAG
AAAATTGAGTTCTGCATCTCGTACCATGCCAACGGGCAGGTCTTCTGGGACAATAACGAG
GGTCAGAATTACAGAATTGTCCATGCACAGTGGAAACCTGACGGAGTGCAGACTCAGATG
GCATCCCAGGACTCTGCATACCACCGGGCGCCCCCCAAGGCCGAGTTGGAGTCGCCAGTC
TTTGGCAGCCCAAGGCTGGCCAGTGGGCTCTTCCCAGAGTGGCAGAGCTGGGGGAGGGTG
GAGAACTTGGCCTCTTATCGGTGAACGAAGCAATCCAGTGACCGGTCTTGACCTTATTCC
CCATGTACATCTAGGTCTATATTGCTCAATATTAGGAAGTCGTTGCTACTTTCTTTCCGT
AGGTTTAGGTTTGAGCTTTGGAGACCTGACTACAAAGAAGATAGCCCCTGGAGAATTCAG
TGTGGGGTCTGGATCGATGCTGCTGCCCAGTTTGGCTGTGGAGGCTCCGGTGACAGCCTG
GAAACCCAATTTTTATAAAAGTAATACTTTGTTCCTGCCCCTTTCTCCTTCCCTCTCAAT
TCACTGGCTTTCACATTGGGCAAGGCACGGTTGAGGAAGGACAGTGGGTGGTGATGGAAA
GCTGTGTTAATGGTACGAGGAACGTCTGAAAAGTACACACCAAGGGCTCTGTAGCTCAAG
TCAGAGCAGGAGTGGGAGGTCTGATACTTAACTGTTGGTGAGAAGACGTGCGGTTATTTT
GTGTTTCGAAGTTGGTTTTATAGGTCTCTGCTGGGGAAATAATTTGGAGACGGGAGAAAA
AGATCCATTCTATGTATTCTTGTGGAGAAAAACCCAAATAAACTTTAGGGGTATTGGGTG
GTCTTTGGGAAAGGTGAATTGTCATGCCGGAGAAGAAAGGTTTTACGTGAAGCCTTTCTG
TTCAAATGTGACTTCTCAAAAATCCTGATTTGGGAAAAGCCTAAGCAAATTTGGCTTTGC
AGTCCTAATGGGATACGTGATATGTGACCTTGTTTCTGATCAAGGTGTCGTGCTCGGGTT
CTCGGCATAGATGCTGCCTGACCAAAAAACCTGCGCTATCATCAATGGCCAACAACTTGT
AGGAACTCAATGTTATGTCAAGGATCGCGTTTTTGCAAGTGCCTTGATTAAATCAGAGTG
TTGCAGTTGCTTAACCCAAGCATCTGAAAGGTCATTTGGTAACTCATGAGGGTTTGGCCC
CATAAGGAGGCCCACTCTGTATGCTGGCGTTCCTCCTGCAACACCGTTGTATTGTCAGGA
GTGTTGTCAGTGTACACAACTTGCATCCTTCATATTGAAGGTGACTCATTTTGTTGCCAC
ACTTTTTCGATGTGATGGTGGAAGTGAGGACTGACACCGATTCTCAATTCAAGAATCCAG
TACCTTGCACATAAAAGCAACCATTTCTGTTTCTTTCTTCTATTCTTGTTATTTTGTCTT
TCTACAAGTTTCTTTGAAGGCAACTTTTTTTGTTGTTTTTTTTTAAAATGGATGTAAATT
GTTTTGGGTATGTTGTAATATACTTGTTTTGGAGTGTGCATAAATCCATTCTGTAAGATC
TTAAGAACAGGAGCCTCTGAATGTTTGCTTCTATCATTGTGCACGTTCATTGAGAATGCA
GGTAATTTTAACACGTGTGATCTGCCATGCTGGAAAAATAGGATTGGCATATGACAGCAT
TTGAGATTTGGCTACCACCCACAGTTTTCTACTCTAAATATTTCACTCTCCTATAGCTAT
CCTTTGTGAACTTCTCACTTTAAGAATAAAAGTGTTTGATATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATCCGCCAGAGCTGCCGCCCAGTGGGTACCGCGGGGAGCCTGGTGCGAAATTACGCA
GGTAGCGGAGTGCCGCCGCCCCTCTGCCTGATGAGCTGCACCAGAATGATCCAGGTTTTA
GATCCACGGCCTTTGACAAGTTCAGTCATGCCCGTGGATGTGGCCATGAGACTCTGCTTG
GCTCACTCACCACCTCTGAAGAGTTTCCTGGGCCCTTATGATGACTTCCAACGAAGAAAT
TTTGTGAACAAATTAAAGCCTCTGAAGCCGTGTCTCAACATGAAACAGGAAGCCAAATCA
CAGAATGATTGGAAGCCTTCGCACAACCAAGCCAAGAAGCGGGTGGTGTTCGCTGACTCC
AAGGGCCTCTCCCTCACCGCCATTCACGTCTTCTCAGACCTCCCGGAAGAGCCAGTGTGG
GATCTCCAGTTTGACCTCTTGGACCTTAATGATATCTCCTCGGGCTTAAAACGCCACGAA
GAGAAGAACTTGATTTTAGATTTCCCTCAGCCCTCAGCTGATTACTTAAGTTTTCGAAAC
CACTTCCAGAAGAACTTTGTCTGCCTGGAGAACTGCTCTTTGCAAGAGCGAATGGTGACG
GGGACTGTGAAGGTGAAAAATGTGAGCTTTGAGAAGAAGGTTCAGATCCGGATCACTTTT
GATACCTGGCAGAACTACACCGATGTGGACTGCGTCTACATGAAGAATATGTACGGTGGC
TCAGAGAGTGACACTTTCTCGTTTGCCATTGACCTACCCGCTGTGATCCCAACAAAGGAG
AAAATTGAGTTCTGCATCTCGTACCATGCCAACGGGCAGGTCTTCTGGGACAATAACGAG
GGTCAGAATTACAGAATTGTCCATGCACAGTGGAAACCTGACGGAGTGCAGACTCAGATG
GCATCCCAGGACTCTGCATACCACCGGGCGCCCCCCAAGGCCGAGTTGGAGTCGCCAGTC
TTTGGCAGCCCAAGGCTGGCCAGTGGGCTCTTCCCAGAGTGGCAGAGCTGGGGGAGGGTG
GAGAACTTGGCCTCTTATCGGTGAACGAAGCAATCCAGTGACCGGTCTTGACCTTATTCC
CCATGTACATCTAGGTCTATATTGCTCAATATTAGGAAGTCGTTGCTACTTTCTTTCCGT
AGGTTTAGGTTTGAGCTTTGGAGACCTGACTACAAAGAAGATAGCCCCTGGAGAATTCAG
TGTGGGGTCTGGATCGATGCTGCTGCCCAGTTTGGCTGTGGAGGCTCCGGTGACAGCCTG
GAAACCCAATTTTTATAAAAGTAATACTTTGTTCCTGCCCCTTTCTCCTTCCCTCTCAAT
TCACTGGCTTTCACATTGGGCAAGGCACGGTTGAGGAAGGACAGTGGGTGGTGATGGAAA
GCTGTGTTAATGGTACGAGGAACGTCTGAAAAGTACACACCAAGGGCTCTGTAGCTCAAG
TCAGAGCAGGAGTGGGAGGTCTGATACTTAACTGTTGGTGAGAAGACGTGCGGTTATTTT
GTGTTTCGAAGTTGGTTTTATAGGTCTCTGCTGGGGAAATAATTTGGAGACGGGAGAAAA
AGATCCATTCTATGTATTCTTGTGGAGAAAAACCCAAATAAACTTTAGGGGTATTGGGTG
GTCTTTGGGAAAGGTGAATTGTCATGCCGGAGAAGAAAGGTTTTACGTGAAGCCTTTCTG
TTCAAATGTGACTTCTCAAAAATCCTGATTTGGGAAAAGCCTAAGCAAATTTGGCTTTGC
AGTCCTAATGGGATACGTGATATGTGACCTTGTTTCTGATCAAGGTGTCGTGCTCGGGTT
CTCGGCATAGATGCTGCCTGACCAAAAAACCTGCGCTATCATCAATGGCCAACAACTTGT
AGGAACTCAATGTTATGTCAAGGATCGCGTTTTTGCAAGTGCCTTGATTAAATCAGAGTG
TTGCAGTTGCTTAACCCAAGCATCTGAAAGGTCATTTGGTAACTCATGAGGGTTTGGCCC
CATAAGGAGGCCCACTCTGTATGCTGGCGTTCCTCCTGCAACACCGTTGTATTGTCAGGA
GTGTTGTCAGTGTACACAACTTGCATCCTTCATATTGAAGGTGACTCATTTTGTTGCCAC
ACTTTTTCGATGTGATGGTGGAAGTGAGGACTGACACCGATTCTCAATTCAAGAATCCAG
TACCTTGCACATAAAAGCAACCATTTCTGTTTCTTTCTTCTATTCTTGTTATTTTGTCTT
TCTACAAGTTTCTTTGAAGGCAACTTTTTTTGTTGTTTTTTTTTAAAATGGATGTAAATT
GTTTTGGGTATGTTGTAATATACTTGTTTTGGAGTGTGCATAAATCCATTCTGTAAGATC
TTAAGAACAGGAGCCTCTGAATGTTTGCTTCTATCATTGTGCACGTTCATTGAGAATGCA
GGTAATTTTAACACGTGTGATCTGCCATGCTGGAAAAATAGGATTGGCATATGACAGCAT
TTGAGATTTGGCTACCACCCACAGTTTTCTACTCTAAATATTTCACTCTCCTATAGCTAT
CCTTTGTGAACTTCTCACTTTAAGAATAAAAGTGTTTGATATAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846138|ref|XP_587365.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846138|ref|XP_587365.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               780-899, + strand, RNAz p=0.759107
               

               
               1941-2176, - strand, RNAz p=0.999828

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               780-899, + strand, RNAz p=0.759107
               

               
               1941-2176, - strand, RNAz p=0.999828

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC012625, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC012625, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-2564, gnl|bosTau2|chr26 (5745420-5747888)
               

               
               101-2564, gnl|Hg17|chr10 (93380607-93378179)
               

               
               101-2564, gnl|Mm7|chr19 (36435043-36432418)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-2564, gnl|bosTau2|chr26 (5745420-5747888)
               

               
               101-2564, gnl|Hg17|chr10 (93380607-93378179)
               

               
               101-2564, gnl|Mm7|chr19 (36435043-36432418)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               vin (2.3279)
               

               
               isp (1.05263)
               

               
               bfe (1.049)
               

               
               ldo (0.582016)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (2.3279)
               

               
               isp (1.05263)
               

               
               bfe (1.049)
               

               
               ldo (0.582016)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	780-899, + strand, RNAz p=0.759107
	1941-2176, - strand, RNAz p=0.999828

	101-2564, gnl\|bosTau2\|chr26 (5745420-5747888)
	101-2564, gnl\|Hg17\|chr10 (93380607-93378179)
	101-2564, gnl\|Mm7\|chr19 (36435043-36432418)

	vin (2.3279)
	isp (1.05263)
	bfe (1.049)
	ldo (0.582016)
	tbr (0.462535)
	ski (0.440205)
	hea (0.408998)
	ste (0.405625)
	gul (0.355177)
	fco (0.314416)
	sme (0.305437)
	csk (0.281492)
	mas (0.210305)
	aor (0.195274)
	lun (0.150489)
	fat (0.147427)
	hlv (0.139256)
	pla (0.133672)
	bla (0.124347)
	spc (0.113366)
	eje (0.0988338)