Non-Coding RNA Search

Ss1.1-risp13_i11.5

Sequence:


               
               TTTTGAAAATCTGAAACTTGCAACTGAACTCCCTGATGCTGAGCTTAGAAGAACTTTATG
GTCTTTAGTAGCTTTCCCAAAGCTCAAACGGCAAGTTTTGTTGTACGAACCTCAAGTCAA
CTCACCCAAAGACTTTACAGAAGGTACCCTCTTCTCAGTGAACCAGGAGTTCAGTTTAAT
AAAAAATGCAAAAGTTCAGAAAAGGGGTAAAATCAACTTGATTGGACGCTTACAGCTCAC
TACAGAAAGGATGAGAGAAGAGGAGAATGAAGGAATAGTTCAACTAAGAATACTGAGAAC
CCAGGAAGCTATCATACAAATAATGAAGATGAGAAAGAAAATTAGTAATGCTCAGCTGCA
GACTGAATTAGTAGAAATTTTGAAAAACATGTTCTTACCACAAAAGAAAATGATAAAAGA
GCAAATAGAATGGCTAATAGAGCACAAATACATCAGAAGAGATGAATCCGATATCAACAC
TTTCATATATATGGCATAATTTTGAATATTTTGGACAATATTAAGAACCCAAATTTTGAA
GTGCTTGGGCAGAAAAGTTGTTACAGTTTGTGCTGGAGGAAGGTTTATCTGGACTTTGAT
TACATAAATATTAAAATCTGCCTTACCTAACAAAACAACTCTACTTTGCCAATCCCATTA
GTCAGCATGGTGGCATCCCCTTCATGTTGCACACTCATTAACAGCATGCTGTTTTGTGGA
GAAACTTGCATTCATGAAGAGCCCACTATGAACTTTGAAAAATAAATCTGATTTATACCC
ACAAGAAGAAATGCCGTTGGGAAGGGTGAAAGTGGGGTTCTTGTTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGAAAATCTGAAACTTGCAACTGAACTCCCTGATGCTGAGCTTAGAAGAACTTTATG
GTCTTTAGTAGCTTTCCCAAAGCTCAAACGGCAAGTTTTGTTGTACGAACCTCAAGTCAA
CTCACCCAAAGACTTTACAGAAGGTACCCTCTTCTCAGTGAACCAGGAGTTCAGTTTAAT
AAAAAATGCAAAAGTTCAGAAAAGGGGTAAAATCAACTTGATTGGACGCTTACAGCTCAC
TACAGAAAGGATGAGAGAAGAGGAGAATGAAGGAATAGTTCAACTAAGAATACTGAGAAC
CCAGGAAGCTATCATACAAATAATGAAGATGAGAAAGAAAATTAGTAATGCTCAGCTGCA
GACTGAATTAGTAGAAATTTTGAAAAACATGTTCTTACCACAAAAGAAAATGATAAAAGA
GCAAATAGAATGGCTAATAGAGCACAAATACATCAGAAGAGATGAATCCGATATCAACAC
TTTCATATATATGGCATAATTTTGAATATTTTGGACAATATTAAGAACCCAAATTTTGAA
GTGCTTGGGCAGAAAAGTTGTTACAGTTTGTGCTGGAGGAAGGTTTATCTGGACTTTGAT
TACATAAATATTAAAATCTGCCTTACCTAACAAAACAACTCTACTTTGCCAATCCCATTA
GTCAGCATGGTGGCATCCCCTTCATGTTGCACACTCATTAACAGCATGCTGTTTTGTGGA
GAAACTTGCATTCATGAAGAGCCCACTATGAACTTTGAAAAATAAATCTGATTTATACCC
ACAAGAAGAAATGCCGTTGGGAAGGGTGAAAGTGGGGTTCTTGTTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26326291|dbj|BAC26889.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26326291|dbj|BAC26889.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               54-155, - strand, RNAz p=0.787151
               

               
               382-501, - strand, RNAz p=0.877546
               

               
               542-774, + strand, RNAz p=0.943718

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-155, - strand, RNAz p=0.787151
               

               
               382-501, - strand, RNAz p=0.877546
               

               
               542-774, + strand, RNAz p=0.943718

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003478, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003478, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               54-180, gnl|bosTau2|chr15 (6007142-6007016)
               

               
               54-180, gnl|canFam2|chr5 (27411818-27411668)
               

               
               54-180, gnl|danRer3|chr21 (14751445-14751592)
               

               
               54-180, gnl|dasNov1|scaffold_36035 (13148-12996)
               

               
               54-180, gnl|echTel1|scaffold_307917 (14667-14517)
               

               
               54-180, gnl|fr1|chrUn (102809444-102809588)
               

               
               54-180, gnl|galGal2|chr1 (172322044-172321898)
               

               
               54-180, gnl|hg17|chr11 (107473551-107473698)
               

               
               54-180, gnl|Hg17|chr11 (107473565-107473691)
               

               
               54-180, gnl|loxAfr1|scaffold_3358 (145741-145893)
               

               
               54-180, gnl|mm7|chr9 (53600680-53600530)
               

               
               54-180, gnl|Mm7|chr9 (53600667-53600541)
               

               
               54-180, gnl|monDom2|scaffold_2 (134866005-134865855)
               

               
               54-180, gnl|oryCun1|scaffold_125745 (5573-5423)
               

               
               54-180, gnl|panTro1|chr9 (109431056-109431203)
               

               
               54-180, gnl|rheMac2|chr14 (106682305-106682452)
               

               
               54-180, gnl|rn3|chr8 (57109145-57108996)
               

               
               54-180, gnl|tetNig1|chrUn_random (29620574-29620721)
               

               
               54-180, gnl|xenTro1|scaffold_812 (311891-311747)
               


               
               303-828, gnl|bosTau2|chr15 (6002559-6002033)
               

               
               303-828, gnl|Hg17|chr11 (107480125-107480651)
               

               
               303-828, gnl|Mm7|chr9 (53596695-53596181)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-180, gnl|bosTau2|chr15 (6007142-6007016)
               

               
               54-180, gnl|canFam2|chr5 (27411818-27411668)
               

               
               54-180, gnl|danRer3|chr21 (14751445-14751592)
               

               
               54-180, gnl|dasNov1|scaffold_36035 (13148-12996)
               

               
               54-180, gnl|echTel1|scaffold_307917 (14667-14517)
               

               
               54-180, gnl|fr1|chrUn (102809444-102809588)
               

               
               54-180, gnl|galGal2|chr1 (172322044-172321898)
               

               
               54-180, gnl|hg17|chr11 (107473551-107473698)
               

               
               54-180, gnl|Hg17|chr11 (107473565-107473691)
               

               
               54-180, gnl|loxAfr1|scaffold_3358 (145741-145893)
               

               
               54-180, gnl|mm7|chr9 (53600680-53600530)
               

               
               54-180, gnl|Mm7|chr9 (53600667-53600541)
               

               
               54-180, gnl|monDom2|scaffold_2 (134866005-134865855)
               

               
               54-180, gnl|oryCun1|scaffold_125745 (5573-5423)
               

               
               54-180, gnl|panTro1|chr9 (109431056-109431203)
               

               
               54-180, gnl|rheMac2|chr14 (106682305-106682452)
               

               
               54-180, gnl|rn3|chr8 (57109145-57108996)
               

               
               54-180, gnl|tetNig1|chrUn_random (29620574-29620721)
               

               
               54-180, gnl|xenTro1|scaffold_812 (311891-311747)
               


               
               303-828, gnl|bosTau2|chr15 (6002559-6002033)
               

               
               303-828, gnl|Hg17|chr11 (107480125-107480651)
               

               
               303-828, gnl|Mm7|chr9 (53596695-53596181)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.314416)
               

               
               isp (0.300752)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               kid (0.129735)

	54-155, - strand, RNAz p=0.787151
	382-501, - strand, RNAz p=0.877546
	542-774, + strand, RNAz p=0.943718

	54-180, gnl\|bosTau2\|chr15 (6007142-6007016)
	54-180, gnl\|canFam2\|chr5 (27411818-27411668)
	54-180, gnl\|danRer3\|chr21 (14751445-14751592)
	54-180, gnl\|dasNov1\|scaffold_36035 (13148-12996)
	54-180, gnl\|echTel1\|scaffold_307917 (14667-14517)
	54-180, gnl\|fr1\|chrUn (102809444-102809588)
	54-180, gnl\|galGal2\|chr1 (172322044-172321898)
	54-180, gnl\|hg17\|chr11 (107473551-107473698)
	54-180, gnl\|Hg17\|chr11 (107473565-107473691)
	54-180, gnl\|loxAfr1\|scaffold_3358 (145741-145893)
	54-180, gnl\|mm7\|chr9 (53600680-53600530)
	54-180, gnl\|Mm7\|chr9 (53600667-53600541)
	54-180, gnl\|monDom2\|scaffold_2 (134866005-134865855)
	54-180, gnl\|oryCun1\|scaffold_125745 (5573-5423)
	54-180, gnl\|panTro1\|chr9 (109431056-109431203)
	54-180, gnl\|rheMac2\|chr14 (106682305-106682452)
	54-180, gnl\|rn3\|chr8 (57109145-57108996)
	54-180, gnl\|tetNig1\|chrUn_random (29620574-29620721)
	54-180, gnl\|xenTro1\|scaffold_812 (311891-311747)

	303-828, gnl\|bosTau2\|chr15 (6002559-6002033)
	303-828, gnl\|Hg17\|chr11 (107480125-107480651)
	303-828, gnl\|Mm7\|chr9 (53596695-53596181)

	fco (0.314416)
	isp (0.300752)
	bfe (0.149858)
	spl (0.143184)
	kid (0.129735)