Non-Coding RNA Search

Ss1.1-risp13_i23.5

Sequence:


               
               GCTTCTTTTGGCTTTTCTCCAGATGTTCACCAAGCTTAAATTTAGAAAAAGACCAGGTTT
CTCCCTCTGTAAATGAATTATAAACATCTTCACCAAATCATAACAATATTCCAGCTTTCG
GGACTGACCTCATGGAAGTCCACTGTTAGCAAATGACGTCCCTGGATTCCATTCTGTGAA
AAATATCAGGAGTCTGAGAGAAGATGAATTTACATGAAATAGCAGCACACGCACCCTTTT
ATCTCCTGGTGTGTATGTCATTCACCTAGTTGTCTTCCCTACCTAATGAATCATCTTAGT
CTTATGATTTGTTCTGCATGTATTATGTTTATTGTAGAAATGTTTATATAACATGCTTTC
CATATCAGGGAAAATCATATCTGTTTAATAAATTGGCTATAACTTTAATATCTGTGGACA
ACTTGTAAAATTTGGAATGTATCATATGTAAAAAGTTTAAAGATATCCAAATAAATGCTT
TAGGTGTTGACATTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCTTTTGGCTTTTCTCCAGATGTTCACCAAGCTTAAATTTAGAAAAAGACCAGGTTT
CTCCCTCTGTAAATGAATTATAAACATCTTCACCAAATCATAACAATATTCCAGCTTTCG
GGACTGACCTCATGGAAGTCCACTGTTAGCAAATGACGTCCCTGGATTCCATTCTGTGAA
AAATATCAGGAGTCTGAGAGAAGATGAATTTACATGAAATAGCAGCACACGCACCCTTTT
ATCTCCTGGTGTGTATGTCATTCACCTAGTTGTCTTCCCTACCTAATGAATCATCTTAGT
CTTATGATTTGTTCTGCATGTATTATGTTTATTGTAGAAATGTTTATATAACATGCTTTC
CATATCAGGGAAAATCATATCTGTTTAATAAATTGGCTATAACTTTAATATCTGTGGACA
ACTTGTAAAATTTGGAATGTATCATATGTAAAAAGTTTAAAGATATCCAAATAAATGCTT
TAGGTGTTGACATTAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-495, gnl|bosTau2|chr23 (17043520-17044014)
               

               
               1-495, gnl|Hg17|chr6 (42768731-42769221)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-495, gnl|bosTau2|chr23 (17043520-17044014)
               

               
               1-495, gnl|Hg17|chr6 (42768731-42769221)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               isp (0.601504)
               

               
               aor (0.585823)
               

               
               spc (0.453463)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               aor (0.585823)
               

               
               spc (0.453463)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eje (0.0988338)

	1-495, gnl\|bosTau2\|chr23 (17043520-17044014)
	1-495, gnl\|Hg17\|chr6 (42768731-42769221)

	isp (0.601504)
	aor (0.585823)
	spc (0.453463)
	vin (0.332557)
	ski (0.29347)
	lyg (0.266205)
	thg (0.253582)
	cbe (0.239234)
	mgp (0.230681)
	nms (0.213858)
	col (0.195008)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	nje (0.16592)
	bfe (0.149858)
	ssp (0.13552)
	ova (0.129132)
	ret (0.128733)
	eje (0.0988338)