Non-Coding RNA Search

Ss1.1-risp14_n24.5

Sequence:


               
               CCAAATCCTTATTTTCTCAAAGACCCCAAAGGATGCGCTCTCGTTCAAGGTCCTTTTCTC
AACACAGGTCGTGTTCTCGATCACCATATTCCAGGTCAAGATCAAGGTCCCCAGGCAGTA
GATCCTCTTCAAGATCTTGCTACTACTCTGAGTCAGGCCACTGCAGACACCGCACGCACC
GAAATTCTCCCCTGTGCGCCAGATCACGTTCAAGATCTCCCTACAGCCGGCGGCCCAGGT
ATGACAGCTACGAGGAATATCAGCACGAGAGGCTGAAGAGGGAAGAATACCGCAGAGAGT
ATGAGAAGCGGGAGTCTGAAAGGGCCAAGCAGAGGGAGAGGCAGAGGCAGAAGGCAATTG
AAGAACGTCGTGTGATTTATGTTGGTAAAATCAGACCTGACACAACACGGACAGAACTGA
GGGACCGTTTTGAAGTTTTTGGTGAAATTGAGGAGTGCACAGTAAATCTGCGGGATGATG
GAGACAGCTATGGTTTCATTACCTACCGTTATACCTGTGATGCTTTTGCTGCTCTTGAAA
ATGGATACACTTTGCGCAGGTCGAATGAAACTGACTTCGAGCTGTACTTTTGTGGACGCA
AGCAATTTTTCAAGTCTAACTATGCAGACCTAGATTCAAATTCAGATGACTTTGATCCTC
TTCCACCAAGAGCAAGTATGACTCTCTGGATTTCGATAGTTTACTGAAAGAAGCTCAGAG
AAGCTTGCGCAGGTAACATGTTCCCTGGCTGAGGATGACAGAGGGACGGTGAATACCTCA
CGGGACAGCGCGTCCTTCCCTAACAGACTCTTGCAAGTCATACTTAGGAATTTCTCCTAC
TTTACACTCTCTGTACAAAAACAAAACACAACAACAACAATACAACAAGAACAACAATAA
TGGTTTACATGAACACAGCTGCTGAAGAGGCAAGAGACAGGATGGATATCCAGTAAGCAC
ATGTTTATTCATGGGTGTCAGCTTTGCTTTCCCTGAGTCTCTTGGTGATGGAGTGTTTGT
GTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGAGTGCGCGCATGTGTGCGCGTGCTCGCCT
GGTTTGGGGGAAGTGTGTGTGTACAGGCGGGGACTGGGGGCACCTGACCAGAGCGTGCAA
GGGCAAACCACTTCAAATGGCAGCAGTTCCATGAAGACACACGTAAAACCTAGAACTTCA
AAATGTGCATATTCTATTCAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAATCCTTATTTTCTCAAAGACCCCAAAGGATGCGCTCTCGTTCAAGGTCCTTTTCTC
AACACAGGTCGTGTTCTCGATCACCATATTCCAGGTCAAGATCAAGGTCCCCAGGCAGTA
GATCCTCTTCAAGATCTTGCTACTACTCTGAGTCAGGCCACTGCAGACACCGCACGCACC
GAAATTCTCCCCTGTGCGCCAGATCACGTTCAAGATCTCCCTACAGCCGGCGGCCCAGGT
ATGACAGCTACGAGGAATATCAGCACGAGAGGCTGAAGAGGGAAGAATACCGCAGAGAGT
ATGAGAAGCGGGAGTCTGAAAGGGCCAAGCAGAGGGAGAGGCAGAGGCAGAAGGCAATTG
AAGAACGTCGTGTGATTTATGTTGGTAAAATCAGACCTGACACAACACGGACAGAACTGA
GGGACCGTTTTGAAGTTTTTGGTGAAATTGAGGAGTGCACAGTAAATCTGCGGGATGATG
GAGACAGCTATGGTTTCATTACCTACCGTTATACCTGTGATGCTTTTGCTGCTCTTGAAA
ATGGATACACTTTGCGCAGGTCGAATGAAACTGACTTCGAGCTGTACTTTTGTGGACGCA
AGCAATTTTTCAAGTCTAACTATGCAGACCTAGATTCAAATTCAGATGACTTTGATCCTC
TTCCACCAAGAGCAAGTATGACTCTCTGGATTTCGATAGTTTACTGAAAGAAGCTCAGAG
AAGCTTGCGCAGGTAACATGTTCCCTGGCTGAGGATGACAGAGGGACGGTGAATACCTCA
CGGGACAGCGCGTCCTTCCCTAACAGACTCTTGCAAGTCATACTTAGGAATTTCTCCTAC
TTTACACTCTCTGTACAAAAACAAAACACAACAACAACAATACAACAAGAACAACAATAA
TGGTTTACATGAACACAGCTGCTGAAGAGGCAAGAGACAGGATGGATATCCAGTAAGCAC
ATGTTTATTCATGGGTGTCAGCTTTGCTTTCCCTGAGTCTCTTGGTGATGGAGTGTTTGT
GTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGAGTGCGCGCATGTGTGCGCGTGCTCGCCT
GGTTTGGGGGAAGTGTGTGTGTACAGGCGGGGACTGGGGGCACCTGACCAGAGCGTGCAA
GGGCAAACCACTTCAAATGGCAGCAGTTCCATGAAGACACACGTAAAACCTAGAACTTCA
AAATGTGCATATTCTATTCAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45544863|gb|AAS67367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45544863|gb|AAS67367.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               711-869, - strand, RNAz p=0.863163
               

               
               1034-1150, - strand, RNAz p=0.998675

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               711-869, - strand, RNAz p=0.863163
               

               
               1034-1150, - strand, RNAz p=0.998675

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-133, gnl|bosTau2|chr6 (20957824-20957692)
               

               
               1-133, gnl|Hg17|chr4 (23491714-23491582)
               

               
               1-133, gnl|Mm7|chr5 (50846778-50846646)
               


               
               360-481, gnl|bosTau2|chr6 (20946960-20946839)
               

               
               360-481, gnl|Hg17|chr4 (23480237-23480116)
               

               
               360-481, gnl|Mm7|chr5 (50836477-50836356)
               


               
               632-1224, gnl|bosTau2|chr6 (20940063-20939490)
               

               
               632-1224, gnl|Hg17|chr4 (23473819-23473226)
               

               
               632-1224, gnl|Mm7|chr5 (50831435-50830822)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-133, gnl|bosTau2|chr6 (20957824-20957692)
               

               
               1-133, gnl|Hg17|chr4 (23491714-23491582)
               

               
               1-133, gnl|Mm7|chr5 (50846778-50846646)
               


               
               360-481, gnl|bosTau2|chr6 (20946960-20946839)
               

               
               360-481, gnl|Hg17|chr4 (23480237-23480116)
               

               
               360-481, gnl|Mm7|chr5 (50836477-50836356)
               


               
               632-1224, gnl|bosTau2|chr6 (20940063-20939490)
               

               
               632-1224, gnl|Hg17|chr4 (23473819-23473226)
               

               
               632-1224, gnl|Mm7|chr5 (50831435-50830822)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ldo (0.194005)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	711-869, - strand, RNAz p=0.863163
	1034-1150, - strand, RNAz p=0.998675

	1-133, gnl\|bosTau2\|chr6 (20957824-20957692)
	1-133, gnl\|Hg17\|chr4 (23491714-23491582)
	1-133, gnl\|Mm7\|chr5 (50846778-50846646)

	360-481, gnl\|bosTau2\|chr6 (20946960-20946839)
	360-481, gnl\|Hg17\|chr4 (23480237-23480116)
	360-481, gnl\|Mm7\|chr5 (50836477-50836356)

	632-1224, gnl\|bosTau2\|chr6 (20940063-20939490)
	632-1224, gnl\|Hg17\|chr4 (23473819-23473226)
	632-1224, gnl\|Mm7\|chr5 (50831435-50830822)

	ldo (0.194005)
	fhi (0.169578)
	eli (0.151814)
	isp (0.150376)
	ssp (0.13552)
	pla (0.133672)
	ebs (0.118301)