Non-Coding RNA Search

Ss1.1-risp15_i21.5

Sequence:


               
               CCTATCTTTTAGGCCCTAATTTATTATTTATCTTGCTATATGTTTTACATGCACAGATTT
AATTTTTGTACTCTAAAGTGAGGATTGGCAGCCTACAGCCTTGGGTCATATGCAGCCACA
CCCATTCATTTACTGTTGGCTGTGGTTGGTTTTTTTGTGCCACAACAGCAGAATTGAGTA
GATAACAGGGTTTGTGTGGCTAGGAAAGCCTCTAATACTTATTATCTTGCACTTTGCAGA
AAAATAGCTGATAGTTGGGGAGGGAATAGGAGTCCTTTCCCTTTTTGGTGATTTGTTGAG
GACTACAGAAGAGCCTGTTGGAAATACTATGGGTGAAGGGACTATCTTAAAAATAAATGC
TGTTATGTTAGGAAAACTGAAAATACTTTACAGCCACATTAAGAAATGCTTGAGCAAAAC
ACATTCTCGTTTTGGATTTGTGCAAGGAATTACATATTTTGAATGGACACAACCTGATAT
ATAGGAAAAACATTCTAACGAGCTCATTTTGGCAACTGCAACACAATGGGAATATCCAGT
TTGATACTTATCAAGTACAGTGGAAAAAGTAGGATCTTTCTAGAACATTGTACAAACTCA
AAAATGCAATTCACCAACTTTATTATGTAATATATATTATTATTCATTTATGATGGGCCA
TCATAAAACATCCTTTAATAGGCCTTTAAAAATGTCCATAAAATGTTTATACCAAATTAT
GCTAATTAGTTGTAGAAGTGCCCATTGGTAAAGAAATCCTCAAAAGATTAATCTGGTCAG
ATAACAACATATTTCCATGTCAACTTAATGATTCTTTTTGTCTGATTCATCTGAGTTACG
GTTTCAAGTGGCAATAAATTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTATCTTTTAGGCCCTAATTTATTATTTATCTTGCTATATGTTTTACATGCACAGATTT
AATTTTTGTACTCTAAAGTGAGGATTGGCAGCCTACAGCCTTGGGTCATATGCAGCCACA
CCCATTCATTTACTGTTGGCTGTGGTTGGTTTTTTTGTGCCACAACAGCAGAATTGAGTA
GATAACAGGGTTTGTGTGGCTAGGAAAGCCTCTAATACTTATTATCTTGCACTTTGCAGA
AAAATAGCTGATAGTTGGGGAGGGAATAGGAGTCCTTTCCCTTTTTGGTGATTTGTTGAG
GACTACAGAAGAGCCTGTTGGAAATACTATGGGTGAAGGGACTATCTTAAAAATAAATGC
TGTTATGTTAGGAAAACTGAAAATACTTTACAGCCACATTAAGAAATGCTTGAGCAAAAC
ACATTCTCGTTTTGGATTTGTGCAAGGAATTACATATTTTGAATGGACACAACCTGATAT
ATAGGAAAAACATTCTAACGAGCTCATTTTGGCAACTGCAACACAATGGGAATATCCAGT
TTGATACTTATCAAGTACAGTGGAAAAAGTAGGATCTTTCTAGAACATTGTACAAACTCA
AAAATGCAATTCACCAACTTTATTATGTAATATATATTATTATTCATTTATGATGGGCCA
TCATAAAACATCCTTTAATAGGCCTTTAAAAATGTCCATAAAATGTTTATACCAAATTAT
GCTAATTAGTTGTAGAAGTGCCCATTGGTAAAGAAATCCTCAAAAGATTAATCTGGTCAG
ATAACAACATATTTCCATGTCAACTTAATGATTCTTTTTGTCTGATTCATCTGAGTTACG
GTTTCAAGTGGCAATAAATTTCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               78-188, - strand, RNAz p=0.844675

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-188, - strand, RNAz p=0.844675

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               102-246, - strand, RNAmicro p=0.997546

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               102-246, - strand, RNAmicro p=0.997546

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-244, gnl|bosTau2|chr16 (24800544-24800780)
               

               
               1-244, gnl|Hg17|chr1 (166088363-166088563)
               

               
               1-244, gnl|Mm7|chr1 (164258247-164258035)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-244, gnl|bosTau2|chr16 (24800544-24800780)
               

               
               1-244, gnl|Hg17|chr1 (166088363-166088563)
               

               
               1-244, gnl|Mm7|chr1 (164258247-164258035)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sme (0.305437)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               nbm (0.198649)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               nbm (0.198649)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	1-244, gnl\|bosTau2\|chr16 (24800544-24800780)
	1-244, gnl\|Hg17\|chr1 (166088363-166088563)
	1-244, gnl\|Mm7\|chr1 (164258247-164258035)

	sme (0.305437)
	tra (0.246184)
	pan (0.23596)
	nbm (0.198649)
	gul (0.177588)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	lin (0.145603)
	ste (0.135208)
	thg (0.126791)
	ldo (0.0970026)