Ss1.1-risp15_o9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAATTGTAGAATTTCTTCAGTCTTTTGATGAGATTACAGCTATGACTGGGGACGGTGT GAATGATGCTCCTGCTCTGAAGAAGTCTGAGATCGGCATTGCCATGGGCTCTGGCACCGC GGTGGCTAAAACTGCCTCCGAGATGGTCCTGGCTGATGACAACTTCTCCACCATTGTGGC TGCTGTGGAGGAGGGACGGGCAATATACAACAACATGAAGCAGTTCATTCGCTACCTCAT CTCGTCCAACGTGGGAGAAGTTGTCTGTATTTTCCTGACAGCAGCCCTTGGATTTCCTGA GGCTTTAATTCCTGTCCAGCTGCTCTGGGTCAATCTGGTGACAGATGGCCTGCCTGCCAC TGCACTGGGGTTCAATCCTCCTGATCTGGACATTATGAACAAACCACCCCGGAACCCAAA GGAACCACTGATCAGTGGGTGGCTCTTTTTCCGCTACCTGGCTATTGGCTGTTACGTTGG TGCTGCTACTGTGGGTGCTGCTGCGTGGTGGTTCATTGCTGCCGATGGTGGTCCAAGAGT GACCTTCTACCAGCTGAGTCATTTCCTACAGTGTAAAGAGGACAACCCAGACTTTGAGGG AGTGGATTGTGCAGTCTTTGAATCCCCTTACCCAATGACAATGGCGCTGTCTGTTCTAGT CACCATAGAGATGTGTAACGCCCTCAACAGTTTGTCGGAAAACCAGTCCCTGCTAAGGAT GCCACCTTGGGAGAACATTTGGCTCGTGGGCTCCATCTGCCTGTCCATGTCACTCCACTT CCTAATCCTCTATGTGGAACCCCTGCCACTTATCTTCCAGATCACACCGCTGAATTTGAC CCAGTGGCTGATGGTGCTGAAAATCTCCTTGCCTGTGATTCTAATGGATGAGACCCTCAA GTTTGTGGCCCGCAACTACCTGGAACCTGCAATACTGGAGTAACCGCTTCCTAAACCATT TTGCAGAAATATAAGGGTGTTCGGTTGCGTGCATGTGCGTTTTTAGCAACACATCTACCA GCCCTCTGCATGATTGATGTTGGGGGTAAAAGAAAATTAGAAAAAAGTCCCCAATTCATT GTGTGTTACGTGGAGGAAACGTGTATTACCAGTGGGGTTTTTTAGCTTTTAAATCAAAAT AATAATTACAAATGTACAATTTAGCTTAATGGATCAGAAATCCTCTCCAGAGAAGTTTGG TTTCTTTGCTGCAAGAAGAATGAGGTTCTGAAACCTTACCCAAGAACTTAGAAGCCATCA GCCAAGTATCCATGTTTCTCTGTGCAAAATGTCATAGCTTAAATAAATGTACAATATTCA ATTGTAATGCATGCCTTCAAGTTGTAAGTAGCCAGATTTCTCTATGATGTCATTGAAACA TGCTACTTTTTAATTGGCCCTGTACAGTTTGCTTATTTATAAATTTATTGAAAACACTAC AGGTGTTGGTTAAAATGTAGGCTTCTAGCTCATAACTTCAGTTATTTTTTGAGTGTGCAA ACAGCTATTTTGCACTGTATTAAATGTAACTTATTTAATGAAATCAAAAGCAGTAGACAG ATGTTGGTGCAATACGAATATTGTGATGCATTTATATTAATAAAATGCTAAACGTCAATT TATCACAACGCATGTTTGACTTTAGACTGTAAATAGAGATCAGTTTATTTCTGTGCTGGT AAAAAGTATTGCACAGACATGGTTTCAGGTAAATAAATCTATTCTATGATAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAATTGTAGAATTTCTTCAGTCTTTTGATGAGATTACAGCTATGACTGGGGACGGTGT GAATGATGCTCCTGCTCTGAAGAAGTCTGAGATCGGCATTGCCATGGGCTCTGGCACCGC GGTGGCTAAAACTGCCTCCGAGATGGTCCTGGCTGATGACAACTTCTCCACCATTGTGGC TGCTGTGGAGGAGGGACGGGCAATATACAACAACATGAAGCAGTTCATTCGCTACCTCAT CTCGTCCAACGTGGGAGAAGTTGTCTGTATTTTCCTGACAGCAGCCCTTGGATTTCCTGA GGCTTTAATTCCTGTCCAGCTGCTCTGGGTCAATCTGGTGACAGATGGCCTGCCTGCCAC TGCACTGGGGTTCAATCCTCCTGATCTGGACATTATGAACAAACCACCCCGGAACCCAAA GGAACCACTGATCAGTGGGTGGCTCTTTTTCCGCTACCTGGCTATTGGCTGTTACGTTGG TGCTGCTACTGTGGGTGCTGCTGCGTGGTGGTTCATTGCTGCCGATGGTGGTCCAAGAGT GACCTTCTACCAGCTGAGTCATTTCCTACAGTGTAAAGAGGACAACCCAGACTTTGAGGG AGTGGATTGTGCAGTCTTTGAATCCCCTTACCCAATGACAATGGCGCTGTCTGTTCTAGT CACCATAGAGATGTGTAACGCCCTCAACAGTTTGTCGGAAAACCAGTCCCTGCTAAGGAT GCCACCTTGGGAGAACATTTGGCTCGTGGGCTCCATCTGCCTGTCCATGTCACTCCACTT CCTAATCCTCTATGTGGAACCCCTGCCACTTATCTTCCAGATCACACCGCTGAATTTGAC CCAGTGGCTGATGGTGCTGAAAATCTCCTTGCCTGTGATTCTAATGGATGAGACCCTCAA GTTTGTGGCCCGCAACTACCTGGAACCTGCAATACTGGAGTAACCGCTTCCTAAACCATT TTGCAGAAATATAAGGGTGTTCGGTTGCGTGCATGTGCGTTTTTAGCAACACATCTACCA GCCCTCTGCATGATTGATGTTGGGGGTAAAAGAAAATTAGAAAAAAGTCCCCAATTCATT GTGTGTTACGTGGAGGAAACGTGTATTACCAGTGGGGTTTTTTAGCTTTTAAATCAAAAT AATAATTACAAATGTACAATTTAGCTTAATGGATCAGAAATCCTCTCCAGAGAAGTTTGG TTTCTTTGCTGCAAGAAGAATGAGGTTCTGAAACCTTACCCAAGAACTTAGAAGCCATCA GCCAAGTATCCATGTTTCTCTGTGCAAAATGTCATAGCTTAAATAAATGTACAATATTCA ATTGTAATGCATGCCTTCAAGTTGTAAGTAGCCAGATTTCTCTATGATGTCATTGAAACA TGCTACTTTTTAATTGGCCCTGTACAGTTTGCTTATTTATAAATTTATTGAAAACACTAC AGGTGTTGGTTAAAATGTAGGCTTCTAGCTCATAACTTCAGTTATTTTTTGAGTGTGCAA ACAGCTATTTTGCACTGTATTAAATGTAACTTATTTAATGAAATCAAAAGCAGTAGACAG ATGTTGGTGCAATACGAATATTGTGATGCATTTATATTAATAAAATGCTAAACGTCAATT TATCACAACGCATGTTTGACTTTAGACTGTAAATAGAGATCAGTTTATTTCTGTGCTGGT AAAAAGTATTGCACAGACATGGTTTCAGGTAAATAAATCTATTCTATGATAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 307-426, - strand, RNAz p=0.888585 | |
| 1482-1600, + strand, RNAz p=0.598907 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 307-426, - strand, RNAz p=0.888585 | |
| 1482-1600, + strand, RNAz p=0.598907 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001681, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 45-206, gnl|bosTau2|chr18 (39562679-39562844) | |
| 45-206, gnl|Hg17|chr19 (47171773-47171619) | |
| 45-206, gnl|Mm7|chr7 (27658245-27658410) | |
| 267-481, gnl|bosTau2|chr17 (30345586-30345372) | |
| 267-481, gnl|canFam2|chr26 (11220141-11220319) | |
| 267-481, gnl|danRer3|chr21 (7871947-7872109) | |
| 267-481, gnl|dasNov1|scaffold_28983 (7661-7480) | |
| 267-481, gnl|echTel1|scaffold_294319 (875-711) | |
| 267-481, gnl|fr1|chrUn (56442974-56443149) | |
| 267-481, gnl|galGal2|chr15 (5267802-5267629) | |
| 267-481, gnl|hg17|chr12 (109243736-109243917) | |
| 267-481, gnl|Hg17|chr12 (109243768-109243970) | |
| 267-481, gnl|loxAfr1|scaffold_14582 (36882-37062) | |
| 267-481, gnl|mm7|chr5 (121693895-121693714) | |
| 267-481, gnl|Mm7|chr5 (121693873-121693659) | |
| 267-481, gnl|monDom2|scaffold_97 (975054-974879) | |
| 267-481, gnl|oryCun1|scaffold_197368 (7522-7704) | |
| 267-481, gnl|panTro1|chr10 (111839357-111839538) | |
| 267-481, gnl|rheMac2|chr11 (111254313-111254494) | |
| 267-481, gnl|rn3|chr12 (35173416-35173597) | |
| 267-481, gnl|tetNig1|chr12 (11602549-11602720) | |
| 267-481, gnl|xenTro1|scaffold_501 (577341-577164) | |
| 553-690, gnl|bosTau2|chr17 (30343239-30343102) | |
| 553-690, gnl|canFam2|chr26 (11222319-11222483) | |
| 553-690, gnl|danRer3|chr21 (7873449-7873609) | |
| 553-690, gnl|dasNov1|scaffold_28983 (5761-5601) | |
| 553-690, gnl|echTel1|scaffold_294319 (273-133) | |
| 553-690, gnl|fr1|chrUn (56443438-56443599) | |
| 553-690, gnl|galGal2|chr15 (5266737-5266558) | |
| 553-690, gnl|hg17|chr12 (109245754-109245917) | |
| 553-690, gnl|Hg17|chr12 (109245770-109245907) | |
| 553-690, gnl|loxAfr1|scaffold_45518 (10332-10472) | |
| 553-690, gnl|mm7|chr5 (121692463-121692302) | |
| 553-690, gnl|Mm7|chr5 (121692447-121692310) | |
| 553-690, gnl|monDom2|scaffold_97 (974331-974182) | |
| 553-690, gnl|oryCun1|scaffold_80581 (186-338) | |
| 553-690, gnl|panTro1|chr10 (111841371-111841534) | |
| 553-690, gnl|rheMac2|chr11 (111257262-111257421) | |
| 553-690, gnl|rn3|chr12 (35174799-35174961) | |
| 553-690, gnl|tetNig1|chr12 (11602998-11603140) | |
| 553-690, gnl|xenTro1|scaffold_501 (574389-574232) | |
| 929-1732, gnl|bosTau2|chr17 (30338494-30337690) | |
| 929-1732, gnl|Hg17|chr12 (109250816-109251617) | |
| 929-1732, gnl|Mm7|chr5 (121688527-121687742) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-206, gnl|bosTau2|chr18 (39562679-39562844) | |
| 45-206, gnl|Hg17|chr19 (47171773-47171619) | |
| 45-206, gnl|Mm7|chr7 (27658245-27658410) | |
| 267-481, gnl|bosTau2|chr17 (30345586-30345372) | |
| 267-481, gnl|canFam2|chr26 (11220141-11220319) | |
| 267-481, gnl|danRer3|chr21 (7871947-7872109) | |
| 267-481, gnl|dasNov1|scaffold_28983 (7661-7480) | |
| 267-481, gnl|echTel1|scaffold_294319 (875-711) | |
| 267-481, gnl|fr1|chrUn (56442974-56443149) | |
| 267-481, gnl|galGal2|chr15 (5267802-5267629) | |
| 267-481, gnl|hg17|chr12 (109243736-109243917) | |
| 267-481, gnl|Hg17|chr12 (109243768-109243970) | |
| 267-481, gnl|loxAfr1|scaffold_14582 (36882-37062) | |
| 267-481, gnl|mm7|chr5 (121693895-121693714) | |
| 267-481, gnl|Mm7|chr5 (121693873-121693659) | |
| 267-481, gnl|monDom2|scaffold_97 (975054-974879) | |
| 267-481, gnl|oryCun1|scaffold_197368 (7522-7704) | |
| 267-481, gnl|panTro1|chr10 (111839357-111839538) | |
| 267-481, gnl|rheMac2|chr11 (111254313-111254494) | |
| 267-481, gnl|rn3|chr12 (35173416-35173597) | |
| 267-481, gnl|tetNig1|chr12 (11602549-11602720) | |
| 267-481, gnl|xenTro1|scaffold_501 (577341-577164) | |
| 553-690, gnl|bosTau2|chr17 (30343239-30343102) | |
| 553-690, gnl|canFam2|chr26 (11222319-11222483) | |
| 553-690, gnl|danRer3|chr21 (7873449-7873609) | |
| 553-690, gnl|dasNov1|scaffold_28983 (5761-5601) | |
| 553-690, gnl|echTel1|scaffold_294319 (273-133) | |
| 553-690, gnl|fr1|chrUn (56443438-56443599) | |
| 553-690, gnl|galGal2|chr15 (5266737-5266558) | |
| 553-690, gnl|hg17|chr12 (109245754-109245917) | |
| 553-690, gnl|Hg17|chr12 (109245770-109245907) | |
| 553-690, gnl|loxAfr1|scaffold_45518 (10332-10472) | |
| 553-690, gnl|mm7|chr5 (121692463-121692302) | |
| 553-690, gnl|Mm7|chr5 (121692447-121692310) | |
| 553-690, gnl|monDom2|scaffold_97 (974331-974182) | |
| 553-690, gnl|oryCun1|scaffold_80581 (186-338) | |
| 553-690, gnl|panTro1|chr10 (111841371-111841534) | |
| 553-690, gnl|rheMac2|chr11 (111257262-111257421) | |
| 553-690, gnl|rn3|chr12 (35174799-35174961) | |
| 553-690, gnl|tetNig1|chr12 (11602998-11603140) | |
| 553-690, gnl|xenTro1|scaffold_501 (574389-574232) | |
| 929-1732, gnl|bosTau2|chr17 (30338494-30337690) | |
| 929-1732, gnl|Hg17|chr12 (109250816-109251617) | |
| 929-1732, gnl|Mm7|chr5 (121688527-121687742) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| isp (18.9474) | |
| vin (17.9581) | |
| tbr (6.01295) | |
| ldo (5.72315) | |
| ssp (5.55631) | |
| ste (5.27312) | |
| hea (4.49898) | |
| bfe (3.8963) | |
| sme (2.13806) | |
| hlv (1.81033) | |
| fco (1.57208) | |
| mas (1.26183) | |
| gul (1.24312) | |
| nms (1.06929) | |
| spc (0.906927) | |
| liv (0.877706) | |
| ret (0.7724) | |
| tra (0.738552) | |
| che (0.68157) | |
| lin (0.582411) | |
| rec (0.519211) | |
| mgp (0.461361) | |
| fat (0.442282) | |
| ese (0.379507) | |
| bla (0.373042) | |
| eru (0.360144) | |
| cki (0.330469) | |
| spl (0.286369) | |
| fce (0.271592) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ova (0.129132) | |
| thg (0.126791) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (18.9474) | |
| vin (17.9581) | |
| tbr (6.01295) | |
| ldo (5.72315) | |
| ssp (5.55631) | |
| ste (5.27312) | |
| hea (4.49898) | |
| bfe (3.8963) | |
| sme (2.13806) | |
| hlv (1.81033) | |
| fco (1.57208) | |
| mas (1.26183) | |
| gul (1.24312) | |
| nms (1.06929) | |
| spc (0.906927) | |
| liv (0.877706) | |
| ret (0.7724) | |
| tra (0.738552) | |
| che (0.68157) | |
| lin (0.582411) | |
| rec (0.519211) | |
| mgp (0.461361) | |
| fat (0.442282) | |
| ese (0.379507) | |
| bla (0.373042) | |
| eru (0.360144) | |
| cki (0.330469) | |
| spl (0.286369) | |
| fce (0.271592) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ova (0.129132) | |
| thg (0.126791) | |
| cty (0.10408) | |
| eje (0.0988338) |