Non-Coding RNA Search

Ss1.1-risp16_e10.5

Sequence:


               
               GCTCAGGCAGCCCTGAATGTGGAAAGGGCCACGACTAGCCCCAGCCTGTGACCTGTGACC
CCTTCTCACACACCCTTTTTCTGGAAGGGGCAAAGGACCCACAGGGTGTTTCTGCTTCCT
CGCTGGCTCCAGAGGTTCCCCATTCTTAGAAGGAAAGCTGTGGCAGAGGAAGGAGAGAAA
ATAGAAGGAAACAGACTGATCCCTGGGTTGTGCTCAAAAATAGCTGCAGATTAAAGGAAA
TCAGGGCGGGAGAGGTTGGGAAGAGCAGTGACGAAATAAGTTTCCTTCTAAACAATCCGC
CCATGCAACTCACATCTCATGGATATCAGGCCCGGACCAAGCCATCTGTAAAAGGTAGAC
GGTTGGCAGGGTTTTGGCAAACATGTGACCACACCCACCTAGCTGCTGTCCACGGTGGAG
CTGGTGCCCTCCAACGTTGTGCTTTCTCGTTGCAGACAGAAGCAGCGAGCAAGGTCAAGT
TCCCTTCCCTGGGGAGTACATCATGCCAAATTGTATCTGCTCATCAGCTGTGGGCATAAG
CTGATGCATTTGATTGGTCCTGCAAGGTTTCCAAAAGGTCAGAACTTCATTACTATAACA
CTATCCACTCCACTTCCCTCCTGGTTATACAAAATAATTACAAGGGTTTTAATTATCGTG
ATTAGGAAGGCACCAGACCAAGGCAGTCCATCTTCAGAGTAGACTACTTGCCTTGATGAG
ATGTTAGTTACACATTCATGTTCTGTGCCACGGGGATGGAAATTCAAAATAAAATCATTC
AAGGACAGAGGAAAGGAATGAGCAGAAACCAAAAACCACAATTAGGGAGAAATCCCAGGA
ATCTGGCATCTCTTCCCTAGACCCATCACTGCCTTCTTGCCCTCTCAACTCTGGTGGTGT
CCACAGGACAAAGGCTTAGCCCCTGGCCCACAATCTCCAATGCAGAGGCATCGAGTCACA
GCGCCCCTACCATCCTCGCATCTCCCCGCTGGCACTGTTATCTGTGACTCCCCTGGTGTT
TCATGTGTCTTTTCTATTTATTGATGTTCCCTCTGCAGATTCATTTCTTTGTACCCAACA
AACTTTAATAAATGGGAATGCTTCCAGTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGGCAGCCCTGAATGTGGAAAGGGCCACGACTAGCCCCAGCCTGTGACCTGTGACC
CCTTCTCACACACCCTTTTTCTGGAAGGGGCAAAGGACCCACAGGGTGTTTCTGCTTCCT
CGCTGGCTCCAGAGGTTCCCCATTCTTAGAAGGAAAGCTGTGGCAGAGGAAGGAGAGAAA
ATAGAAGGAAACAGACTGATCCCTGGGTTGTGCTCAAAAATAGCTGCAGATTAAAGGAAA
TCAGGGCGGGAGAGGTTGGGAAGAGCAGTGACGAAATAAGTTTCCTTCTAAACAATCCGC
CCATGCAACTCACATCTCATGGATATCAGGCCCGGACCAAGCCATCTGTAAAAGGTAGAC
GGTTGGCAGGGTTTTGGCAAACATGTGACCACACCCACCTAGCTGCTGTCCACGGTGGAG
CTGGTGCCCTCCAACGTTGTGCTTTCTCGTTGCAGACAGAAGCAGCGAGCAAGGTCAAGT
TCCCTTCCCTGGGGAGTACATCATGCCAAATTGTATCTGCTCATCAGCTGTGGGCATAAG
CTGATGCATTTGATTGGTCCTGCAAGGTTTCCAAAAGGTCAGAACTTCATTACTATAACA
CTATCCACTCCACTTCCCTCCTGGTTATACAAAATAATTACAAGGGTTTTAATTATCGTG
ATTAGGAAGGCACCAGACCAAGGCAGTCCATCTTCAGAGTAGACTACTTGCCTTGATGAG
ATGTTAGTTACACATTCATGTTCTGTGCCACGGGGATGGAAATTCAAAATAAAATCATTC
AAGGACAGAGGAAAGGAATGAGCAGAAACCAAAAACCACAATTAGGGAGAAATCCCAGGA
ATCTGGCATCTCTTCCCTAGACCCATCACTGCCTTCTTGCCCTCTCAACTCTGGTGGTGT
CCACAGGACAAAGGCTTAGCCCCTGGCCCACAATCTCCAATGCAGAGGCATCGAGTCACA
GCGCCCCTACCATCCTCGCATCTCCCCGCTGGCACTGTTATCTGTGACTCCCCTGGTGTT
TCATGTGTCTTTTCTATTTATTGATGTTCCCTCTGCAGATTCATTTCTTTGTACCCAACA
AACTTTAATAAATGGGAATGCTTCCAGTCAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               521-871, gnl|bosTau2|chr13 (47542037-47542391)
               

               
               521-871, gnl|Hg17|chr7 (29729025-29729674)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               521-871, gnl|bosTau2|chr13 (47542037-47542391)
               

               
               521-871, gnl|Hg17|chr7 (29729025-29729674)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               nje (0.33184)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               nje (0.33184)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	521-871, gnl\|bosTau2\|chr13 (47542037-47542391)
	521-871, gnl\|Hg17\|chr7 (29729025-29729674)

	mas (0.42061)
	fcc (0.39557)
	nje (0.33184)
	nms (0.213858)
	mcp (0.170648)
	isp (0.150376)
	fat (0.147427)
	ste (0.135208)
	lyg (0.133103)
	ese (0.126502)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)