Non-Coding RNA Search

Ss1.1-risp16_f4.5

Sequence:


               
               ATTTATGATGGCGAGAACCCTGCTGGCCATCTTATATGCCCCTAAGGACGGCATAGAAGG
AGCTGACTGCTGATGGCTTGAAGACAATTGGAGATGGCAGAAAAAAGACTCAGTGGCCTT
GAAGGAAGCCATGTGGAATTGCCACAGAAGCCAAGGAGTTGAAAGGCATTCCAGGCTGCT
GCAGCTACTCAAAGAAGTCATCAAGGACCCGTGTTCCTCCTAGTGCCCCAGTTCTCCATC
CTTAGGATGTTTCTTCCATCTTCATGGTGACAAGATGGCTTCTCCACCATCAAGCACTGT
GTCCATGAGTCAGGCAGAAAGAAGAGGGGCAAGGCAATGGGCTTGTTCCCAGAAGCCCCA
CCAAGCCACTGTCTATAGGATTGAGAATCAGCCAGAACTATATTATATGGTACCGTGAAT
GAAAAATGTTGCCTGCCATATCAGTAAATAAAGGATGTTGCAGCCACTGAGGTATGACAG
CCACCTCTACTGGCACACTCTGAGGGAACTCAGGATTGGAAAGAGCAGGAAACTGGCCCT
AGACAGCTAAGGTGCGTATCAAAGGCATGATTTCAA------------------------
CACACATAGAAAAGTGCTAAAGTCATAATTTTCTTTGATTAACAGTAATCTTTTGAAGTT
CCAACTATACCTGGTCTTTGTTGCAGAAACTCCTATATATTCTGGCTCCTCCTTTACCTC
TTCAGAACAATCCCTCAGAGCAACCTGAGAGGCGGCATTCTGGACTTATGTCTTCAGTTT
TGTCTATCAAATAAAATATAATTCTTGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATGATGGCGAGAACCCTGCTGGCCATCTTATATGCCCCTAAGGACGGCATAGAAGG
AGCTGACTGCTGATGGCTTGAAGACAATTGGAGATGGCAGAAAAAAGACTCAGTGGCCTT
GAAGGAAGCCATGTGGAATTGCCACAGAAGCCAAGGAGTTGAAAGGCATTCCAGGCTGCT
GCAGCTACTCAAAGAAGTCATCAAGGACCCGTGTTCCTCCTAGTGCCCCAGTTCTCCATC
CTTAGGATGTTTCTTCCATCTTCATGGTGACAAGATGGCTTCTCCACCATCAAGCACTGT
GTCCATGAGTCAGGCAGAAAGAAGAGGGGCAAGGCAATGGGCTTGTTCCCAGAAGCCCCA
CCAAGCCACTGTCTATAGGATTGAGAATCAGCCAGAACTATATTATATGGTACCGTGAAT
GAAAAATGTTGCCTGCCATATCAGTAAATAAAGGATGTTGCAGCCACTGAGGTATGACAG
CCACCTCTACTGGCACACTCTGAGGGAACTCAGGATTGGAAAGAGCAGGAAACTGGCCCT
AGACAGCTAAGGTGCGTATCAAAGGCATGATTTCAA------------------------
CACACATAGAAAAGTGCTAAAGTCATAATTTTCTTTGATTAACAGTAATCTTTTGAAGTT
CCAACTATACCTGGTCTTTGTTGCAGAAACTCCTATATATTCTGGCTCCTCCTTTACCTC
TTCAGAACAATCCCTCAGAGCAACCTGAGAGGCGGCATTCTGGACTTATGTCTTCAGTTT
TGTCTATCAAATAAAATATAATTCTTGAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               415-781, gnl|bosTau2|chr10 (21010918-21010535)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               415-781, gnl|bosTau2|chr10 (21010918-21010535)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               pla (0.133672)