Non-Coding RNA Search

Ss1.1-risp17_e12.5

Sequence:


               
               ACCAACCCACCCAACAACAGGAAGAATGGCTGAAAAAGAATCTACATTATCACACCTTCT
GGTCCCTATTCTTCTCTTGATTGGCTGGATTGTGGGATGCATCGTAATGGTTTATGTTGT
CTTCTCATAGAAAGGCAAGAAGACTTCAGATTGACATCATTTAGAAGAATTAAGAAAATC
ATGAAAATGACAAGATAATTAAACGTTTCTCATGTAAATAACAGCAATGTTTGACATCAG
TTTATAAACTTGGATTTGTAAACTGGTTCTTTAGTGGGCTTAAGAATCACTTTAGAAGCA
TGTTTAAAATTCTGGGTACAAATAAGAACTACAAGAAAATATAGATGAATTTCTCTATAA
GCTTGGGGTAGAAAAAAATGCTCTCAACCATGACTTAAAATGGATAAGCAATAGGAAGTT
TTGTAACTTATATTAGAAAATTTTGGTCATCCCTCAGATATATAGAATATGTAGAAAAAT
ATATAGAAAAATGAGTTAGAGATACAATGAGCTAGAGATACGAAGAGATAGTTCACAGAA
AACAAAAATTTAAGTATAAACTTAACCTTTAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAACCCACCCAACAACAGGAAGAATGGCTGAAAAAGAATCTACATTATCACACCTTCT
GGTCCCTATTCTTCTCTTGATTGGCTGGATTGTGGGATGCATCGTAATGGTTTATGTTGT
CTTCTCATAGAAAGGCAAGAAGACTTCAGATTGACATCATTTAGAAGAATTAAGAAAATC
ATGAAAATGACAAGATAATTAAACGTTTCTCATGTAAATAACAGCAATGTTTGACATCAG
TTTATAAACTTGGATTTGTAAACTGGTTCTTTAGTGGGCTTAAGAATCACTTTAGAAGCA
TGTTTAAAATTCTGGGTACAAATAAGAACTACAAGAAAATATAGATGAATTTCTCTATAA
GCTTGGGGTAGAAAAAAATGCTCTCAACCATGACTTAAAATGGATAAGCAATAGGAAGTT
TTGTAACTTATATTAGAAAATTTTGGTCATCCCTCAGATATATAGAATATGTAGAAAAAT
ATATAGAAAAATGAGTTAGAGATACAATGAGCTAGAGATACGAAGAGATAGTTCACAGAA
AACAAAAATTTAAGTATAAACTTAACCTTTAACCTC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               133-485, gnl|bosTau2|chr1 (72098981-72099328)
               

               
               133-485, gnl|Hg17|chr3 (156491339-156490832)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-485, gnl|bosTau2|chr1 (72098981-72099328)
               

               
               133-485, gnl|Hg17|chr3 (156491339-156490832)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               bfe (1.19886)
               

               
               mas (0.84122)
               

               
               nms (0.641574)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               col (0.195008)
               

               
               ctl (0.153069)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.19886)
               

               
               mas (0.84122)
               

               
               nms (0.641574)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               col (0.195008)
               

               
               ctl (0.153069)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

	133-485, gnl\|bosTau2\|chr1 (72098981-72099328)
	133-485, gnl\|Hg17\|chr3 (156491339-156490832)

	bfe (1.19886)
	mas (0.84122)
	nms (0.641574)
	vin (0.332557)
	isp (0.300752)
	col (0.195008)
	ctl (0.153069)
	ret (0.128733)
	ese (0.126502)