Non-Coding RNA Search

Ss1.1-risp19_d19.5

Sequence:


               
               ATGTTTCTTTTACCTCCATTTGGGGGTTTTAGTGTGCCTCCCCCAGCTCCCCTCTCTAAG
CCAGTGTCCTCTTGAGCAGTTTCCAGATTTCGGGTAGCCATACCAAAGCCAGGATGTTTT
CATTCATTTGGATACCAGTATTTATGGGAGTCTAACTACCTGACTTAGTTTCAAACAAAC
AAACAAACAAAAACACAACTTTTAACTGGAGTCAGTGTAAGATCCCAGCGGATCTGCAAA
TCAAGCTAGTCATATTTGTATGAGACCCTGTTTTCAGGATTGGGTGACTTTTCTAAGAGA
AATATAGGGGGTGGGTAGGGTTGGTTGCGTTTTTCTTTTTTTTTTAACCTAACTTGGGAG
TTCTGTTTTCTACAATGTTTTTAGTTTTGTTTTTCTATTTACATTTCCTTTTAGCCTGAA
TTTTTACTAAATTTCCTCCCAATCTAGAAAACTTGTTTCTAACCTGGGAATTTGAAATCT
CAGTACTTGAAGTTACACTGTTTTTTTTCCAGAAGAATTTAAACCACTTTAATATTAGAA
CATGGGGGAAATGTATTGCAGCCATTTCAAGCAGTTGGTGGGCTTTTTATACAATAACAT
CATTAACTGGTACATAAAGTGTTCTGAAAGGTGAATGTAAACTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTTCTTTTACCTCCATTTGGGGGTTTTAGTGTGCCTCCCCCAGCTCCCCTCTCTAAG
CCAGTGTCCTCTTGAGCAGTTTCCAGATTTCGGGTAGCCATACCAAAGCCAGGATGTTTT
CATTCATTTGGATACCAGTATTTATGGGAGTCTAACTACCTGACTTAGTTTCAAACAAAC
AAACAAACAAAAACACAACTTTTAACTGGAGTCAGTGTAAGATCCCAGCGGATCTGCAAA
TCAAGCTAGTCATATTTGTATGAGACCCTGTTTTCAGGATTGGGTGACTTTTCTAAGAGA
AATATAGGGGGTGGGTAGGGTTGGTTGCGTTTTTCTTTTTTTTTTAACCTAACTTGGGAG
TTCTGTTTTCTACAATGTTTTTAGTTTTGTTTTTCTATTTACATTTCCTTTTAGCCTGAA
TTTTTACTAAATTTCCTCCCAATCTAGAAAACTTGTTTCTAACCTGGGAATTTGAAATCT
CAGTACTTGAAGTTACACTGTTTTTTTTCCAGAAGAATTTAAACCACTTTAATATTAGAA
CATGGGGGAAATGTATTGCAGCCATTTCAAGCAGTTGGTGGGCTTTTTATACAATAACAT
CATTAACTGGTACATAAAGTGTTCTGAAAGGTGAATGTAAACTGTAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               234-345, + strand, RNAz p=0.930899
               

               
               396-510, - strand, RNAz p=0.646145

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-345, + strand, RNAz p=0.930899
               

               
               396-510, - strand, RNAz p=0.646145

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_022491, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_022491, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               50-345, gnl|bosTau2|chr17 (31914660-31914958)
               

               
               50-345, gnl|Hg17|chr12 (117317592-117317888)
               


               
               356-640, gnl|bosTau2|chr17 (31915003-31915298)
               

               
               356-640, gnl|Hg17|chr12 (117317913-117318185)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-345, gnl|bosTau2|chr17 (31914660-31914958)
               

               
               50-345, gnl|Hg17|chr12 (117317592-117317888)
               


               
               356-640, gnl|bosTau2|chr17 (31915003-31915298)
               

               
               356-640, gnl|Hg17|chr12 (117317913-117318185)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               gul (0.355177)
               

               
               isp (0.300752)
               

               
               lun (0.150489)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               lun (0.150489)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	234-345, + strand, RNAz p=0.930899
	396-510, - strand, RNAz p=0.646145

	50-345, gnl\|bosTau2\|chr17 (31914660-31914958)
	50-345, gnl\|Hg17\|chr12 (117317592-117317888)

	356-640, gnl\|bosTau2\|chr17 (31915003-31915298)
	356-640, gnl\|Hg17\|chr12 (117317913-117318185)

	gul (0.355177)
	isp (0.300752)
	lun (0.150489)
	cbr (0.127975)
	pgl (0.118483)
	cbl (0.114797)
	nbm (0.0993246)
	ldo (0.0970026)