Non-Coding RNA Search

Ss1.1-risp19_j2.5

Sequence:


               
               CAGCACTGACTGATCAGACACATTTAGGTTCAGGGTGGACCTTTGTCTTGTCAAGATTGT
CTAGGCCCATGATGATAATTTATGGCATAGTGTGGAATAGTTATTTTGTTAACCCCACTG
TTTTGGGAAATAATGCCAACTGGGTTGAGTAGCATTTTCAGGGAGATTGAGTTTTTTGAC
TGAACGTGGAGGCTTCACTGCTTTTTCTGGTTTCTGTGAAGATTTGGAACATAGCAAACG
TCGGAAAAACTCACCTTGGGCAGGTTGATGATGGCAAAAATAATTTTAAGAGGAAAAGAA
TGCTCTTATGTAATTACCCTAAACTTTGAGGAGCATTGCTGACCATAATACGGCTTAGTC
TTCTTACTGCTCTTAAAAGCAGGTAAATTGTTTCAAAGTAGGTTTTGTTTGTGTGTATGT
ATAGTGTAAAAGAACTGAATTTTGATGCTTACAGCACTTGGTGTGTGCGTTTGTATCAAA
ATTTGCCTGTCTCTTTATGAAGGAGGCTTGTTCTTCACACCTCAGTTTATTTGATGTGAG
GCAAGTTGAAAGACAACACTCCCACTCTGATTCTGTGGTGCCATGAGATTTAAAGTAATA
TAGGAAGAAAATTTTAAGAAAGGCACATCTCTTGAGGTGTTATCAGTGTAGTACCTAATA
AAAAAATAATACCCTTACCATTTATAATTTCTAGCATCTTTCTGTGAGATCATTTTGGGG
ACAATAAAAAGTGACATGTCCAATCTCATTTCAGAATAAAAGCTAGCATCTTTAAAATTT
TCAGATTGCTTGCTTACAGGTATAAGTAAGAAGTGTTGTGGAGAAACAATTCCTTTCAGA
GGATTACTTTTTTCAATTTTGGTTTTAGTAATCTAGGCCTTGCCTGTAAAGAACAAAAGA
TGGTTTTTAAATAACTGTTTGTGGAATGTGTTTAAAGGATTGATTCTAGAACCTTTGTAT
ATTTGATAGTATTTCTAACTTTCATTTCTTTACTGTTTGCAGTTAATGTTCATGTTCTGC
TATGCAATCATTTATATGCACGTTTCTTTAATTTTTTTAGATTTTTCTGGATGTATAGTT
TAAACAACAAAAAGTCTATTTAAAACTGTAGCAGTAGTTTGCAGTTCTAGCAAAGAGGAA
AGTTGTGGGGTTAAACTTTGTATTTTCTTTCTTATAGAAGCTTCTAAAAAGGTATTTTTA
TATGTTCTTTTTAACAAATATTGTGTACAACCTTTAAAACATCAATGTTTGGATCAAAAC
AAGACCCAGCTTATTTTCTGCTTGCTGTAAATTAAGCAAACATGCTATAATAAAAACAAA
ATGAAGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACTGACTGATCAGACACATTTAGGTTCAGGGTGGACCTTTGTCTTGTCAAGATTGT
CTAGGCCCATGATGATAATTTATGGCATAGTGTGGAATAGTTATTTTGTTAACCCCACTG
TTTTGGGAAATAATGCCAACTGGGTTGAGTAGCATTTTCAGGGAGATTGAGTTTTTTGAC
TGAACGTGGAGGCTTCACTGCTTTTTCTGGTTTCTGTGAAGATTTGGAACATAGCAAACG
TCGGAAAAACTCACCTTGGGCAGGTTGATGATGGCAAAAATAATTTTAAGAGGAAAAGAA
TGCTCTTATGTAATTACCCTAAACTTTGAGGAGCATTGCTGACCATAATACGGCTTAGTC
TTCTTACTGCTCTTAAAAGCAGGTAAATTGTTTCAAAGTAGGTTTTGTTTGTGTGTATGT
ATAGTGTAAAAGAACTGAATTTTGATGCTTACAGCACTTGGTGTGTGCGTTTGTATCAAA
ATTTGCCTGTCTCTTTATGAAGGAGGCTTGTTCTTCACACCTCAGTTTATTTGATGTGAG
GCAAGTTGAAAGACAACACTCCCACTCTGATTCTGTGGTGCCATGAGATTTAAAGTAATA
TAGGAAGAAAATTTTAAGAAAGGCACATCTCTTGAGGTGTTATCAGTGTAGTACCTAATA
AAAAAATAATACCCTTACCATTTATAATTTCTAGCATCTTTCTGTGAGATCATTTTGGGG
ACAATAAAAAGTGACATGTCCAATCTCATTTCAGAATAAAAGCTAGCATCTTTAAAATTT
TCAGATTGCTTGCTTACAGGTATAAGTAAGAAGTGTTGTGGAGAAACAATTCCTTTCAGA
GGATTACTTTTTTCAATTTTGGTTTTAGTAATCTAGGCCTTGCCTGTAAAGAACAAAAGA
TGGTTTTTAAATAACTGTTTGTGGAATGTGTTTAAAGGATTGATTCTAGAACCTTTGTAT
ATTTGATAGTATTTCTAACTTTCATTTCTTTACTGTTTGCAGTTAATGTTCATGTTCTGC
TATGCAATCATTTATATGCACGTTTCTTTAATTTTTTTAGATTTTTCTGGATGTATAGTT
TAAACAACAAAAAGTCTATTTAAAACTGTAGCAGTAGTTTGCAGTTCTAGCAAAGAGGAA
AGTTGTGGGGTTAAACTTTGTATTTTCTTTCTTATAGAAGCTTCTAAAAAGGTATTTTTA
TATGTTCTTTTTAACAAATATTGTGTACAACCTTTAAAACATCAATGTTTGGATCAAAAC
AAGACCCAGCTTATTTTCTGCTTGCTGTAAATTAAGCAAACATGCTATAATAAAAACAAA
ATGAAGGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               417-534, - strand, RNAz p=0.995767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               417-534, - strand, RNAz p=0.995767

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1337, gnl|bosTau2|chr19 (27606086-27607423)
               

               
               4-1337, gnl|Hg17|chr1 (24042520-24040869)
               

               
               4-1337, gnl|Mm7|chr4 (135242892-135244259)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1337, gnl|bosTau2|chr19 (27606086-27607423)
               

               
               4-1337, gnl|Hg17|chr1 (24042520-24040869)
               

               
               4-1337, gnl|Mm7|chr4 (135242892-135244259)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               isp (0.300752)
               

               
               sug (0.254582)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               isp (0.300752)
               

               
               sug (0.254582)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	4-1337, gnl\|bosTau2\|chr19 (27606086-27607423)
	4-1337, gnl\|Hg17\|chr1 (24042520-24040869)
	4-1337, gnl\|Mm7\|chr4 (135242892-135244259)

	mgp (0.461361)
	ret (0.3862)
	isp (0.300752)
	sug (0.254582)
	fhi (0.169578)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	hlv (0.139256)
	tra (0.123092)
	eje (0.0988338)