Non-Coding RNA Search

Ss1.1-risp19_m24.5

Sequence:


               
               GAAGAGAAGCAGTTTAAATTTCATGGTACTGTGGAGGCCGGGGGAAAATGCCACGTTTGA
GTGAAGAAATACAGGACCCGAAAATGTCCCTTTGCAAGCAACACTTTAACCCAAAGATGC
CTAAATGCCATTTTGATGTTCATTTTAGTGAAAAGGACACATATATGTTCGACACTGTGT
ATGTATGTGGGGAAAGCTGGGTATGATTTTTCCTAAAAGAAAATTCAGATAATGGATCAC
CACACGTAGGCCCCTGCAGCAGTGTCTCCAGAAACATCCCTTTCCATTAAGAGCCTCCCT
TAAAATGTCACACCTGATGGATGGTTACTGAACTGGAGAATAGATTTGGCACATCTTTTT
TGTCTTTTGATTCAGATTCAAAACTTAGCACAAACCAGGTCAAAATTACTTTAGGTTAGA
ATTTATTGCCATTTATTCCTTTTTATATAAATTTCTATAGATTATACTCTTATTTTTTTA
TGTTATTAACTGGTCTAGGGTTGCAAACATGGGTTTGTCTGGAGTACATTTTCAAATAAC
TTTGTAACAGAGAAATGGTTTTGTGCATGTTCTTGGAAGTACTTATGTACAGAAGGGAGG
GACTGATTATTTTTCTACAAAGTAATTTATGATTTTTAATTTTCTAATGTGCCTTGGATA
TGTGCCAAATGATGGAGAAGAAACAGTAAATTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGAAGCAGTTTAAATTTCATGGTACTGTGGAGGCCGGGGGAAAATGCCACGTTTGA
GTGAAGAAATACAGGACCCGAAAATGTCCCTTTGCAAGCAACACTTTAACCCAAAGATGC
CTAAATGCCATTTTGATGTTCATTTTAGTGAAAAGGACACATATATGTTCGACACTGTGT
ATGTATGTGGGGAAAGCTGGGTATGATTTTTCCTAAAAGAAAATTCAGATAATGGATCAC
CACACGTAGGCCCCTGCAGCAGTGTCTCCAGAAACATCCCTTTCCATTAAGAGCCTCCCT
TAAAATGTCACACCTGATGGATGGTTACTGAACTGGAGAATAGATTTGGCACATCTTTTT
TGTCTTTTGATTCAGATTCAAAACTTAGCACAAACCAGGTCAAAATTACTTTAGGTTAGA
ATTTATTGCCATTTATTCCTTTTTATATAAATTTCTATAGATTATACTCTTATTTTTTTA
TGTTATTAACTGGTCTAGGGTTGCAAACATGGGTTTGTCTGGAGTACATTTTCAAATAAC
TTTGTAACAGAGAAATGGTTTTGTGCATGTTCTTGGAAGTACTTATGTACAGAAGGGAGG
GACTGATTATTTTTCTACAAAGTAATTTATGATTTTTAATTTTCTAATGTGCCTTGGATA
TGTGCCAAATGATGGAGAAGAAACAGTAAATTCTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr18 (35455884-35456576)
               

               
               1-696, gnl|Hg17|chr19 (37780473-37779761)
               

               
               1-696, gnl|Mm7|chr7 (32529600-32530240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr18 (35455884-35456576)
               

               
               1-696, gnl|Hg17|chr19 (37780473-37779761)
               

               
               1-696, gnl|Mm7|chr7 (32529600-32530240)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               sag (0.36543)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

	1-696, gnl\|bosTau2\|chr18 (35455884-35456576)
	1-696, gnl\|Hg17\|chr19 (37780473-37779761)
	1-696, gnl\|Mm7\|chr7 (32529600-32530240)

	sag (0.36543)
	ret (0.257467)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	fty (0.17584)
	sin (0.174948)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	pla (0.133672)
	tra (0.123092)