Non-Coding RNA Search

Ss1.1-risp20_d2.5

Sequence:


               
               CCCCCCGGAAGAGGGCCCAAATTAAAATTTGAATCACCTCCAACTGACAATCCGGATAAC
CATGGGAAAACGTTAAGTCATTTCTTTATAAAAAGCAAATCTGTTTTATAACTGCAGATT
TTTTAGACAAATTTTCTTGTATCAGGAAGAAATATAAATTTTGTCATGTTTCTGTAGCAT
TTTTTTCCTGAGTCTCAGATTAGGAACAAAATCTGAGTGCACCCAGTACCTGAAAATGTT
TTATTTCTCTCCTTTTTAACGTCAGCATAGTAGACAGTGTGTCATCACTAAGCTGGTGGT
CGTTCCCCGGGTACATTTAATCCACCTCGTCTATGGTAATGTCTTTATATGAGGGGGAAA
ATGGCTTGAACCTGTGTATCACATGTGACTTTGACATGTACACCTTGAATGGCACTAATT
TTTATTTGGACTATTTTTCTATAACACGGTAGGTAGCCCTAGAAAAAGAGGTTTTATTTT
GTAAACAATCATTTGTGACCTCAGCCATTCTCTGGTTAATATTTTGGCTCACAGCAGATA
CTTGCCAGATCATGTATGAGGGGTGGTGCATGTTGAATTGAAACTGGCATAAAACTGCCT
CCTTTGTCTTGCTCTGACTGAGTTTTTAATAGCGTGTGCCAATTTCGTGACTGTGATCAT
GTGAAAGTCCTGTTGAAATGAAAACTGACGTCTGACCCCCGGATCAAAGAACTGATGTTC
AGGTGTGACTAATTCTCCTAGCAAATGTCAAGCTTTTCCATGTGAATGGTTTTCTGCAAG
AATATATAAAAATCAATAAAATCCTCTAAATTTTCACAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCGGAAGAGGGCCCAAATTAAAATTTGAATCACCTCCAACTGACAATCCGGATAAC
CATGGGAAAACGTTAAGTCATTTCTTTATAAAAAGCAAATCTGTTTTATAACTGCAGATT
TTTTAGACAAATTTTCTTGTATCAGGAAGAAATATAAATTTTGTCATGTTTCTGTAGCAT
TTTTTTCCTGAGTCTCAGATTAGGAACAAAATCTGAGTGCACCCAGTACCTGAAAATGTT
TTATTTCTCTCCTTTTTAACGTCAGCATAGTAGACAGTGTGTCATCACTAAGCTGGTGGT
CGTTCCCCGGGTACATTTAATCCACCTCGTCTATGGTAATGTCTTTATATGAGGGGGAAA
ATGGCTTGAACCTGTGTATCACATGTGACTTTGACATGTACACCTTGAATGGCACTAATT
TTTATTTGGACTATTTTTCTATAACACGGTAGGTAGCCCTAGAAAAAGAGGTTTTATTTT
GTAAACAATCATTTGTGACCTCAGCCATTCTCTGGTTAATATTTTGGCTCACAGCAGATA
CTTGCCAGATCATGTATGAGGGGTGGTGCATGTTGAATTGAAACTGGCATAAAACTGCCT
CCTTTGTCTTGCTCTGACTGAGTTTTTAATAGCGTGTGCCAATTTCGTGACTGTGATCAT
GTGAAAGTCCTGTTGAAATGAAAACTGACGTCTGACCCCCGGATCAAAGAACTGATGTTC
AGGTGTGACTAATTCTCCTAGCAAATGTCAAGCTTTTCCATGTGAATGGTTTTCTGCAAG
AATATATAAAAATCAATAAAATCCTCTAAATTTTCACAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-818, gnl|bosTau2|chr25 (23471876-23472690)
               

               
               1-818, gnl|Hg17|chr7 (55841242-55842081)
               

               
               1-818, gnl|Mm7|chr5 (128995344-128996161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-818, gnl|bosTau2|chr25 (23471876-23472690)
               

               
               1-818, gnl|Hg17|chr7 (55841242-55842081)
               

               
               1-818, gnl|Mm7|chr5 (128995344-128996161)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               isp (1.35338)
               

               
               tbr (1.07925)
               

               
               vin (0.997672)
               

               
               bfe (0.899146)
               

               
               hea (0.817996)
               

               
               sme (0.610874)
               

               
               sag (0.548145)
               

               
               tra (0.492368)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ssp (0.406559)
               

               
               sug (0.381874)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               lnt (0.284616)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (1.35338)
               

               
               tbr (1.07925)
               

               
               vin (0.997672)
               

               
               bfe (0.899146)
               

               
               hea (0.817996)
               

               
               sme (0.610874)
               

               
               sag (0.548145)
               

               
               tra (0.492368)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ssp (0.406559)
               

               
               sug (0.381874)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               lnt (0.284616)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-818, gnl\|bosTau2\|chr25 (23471876-23472690)
	1-818, gnl\|Hg17\|chr7 (55841242-55842081)
	1-818, gnl\|Mm7\|chr5 (128995344-128996161)

	isp (1.35338)
	tbr (1.07925)
	vin (0.997672)
	bfe (0.899146)
	hea (0.817996)
	sme (0.610874)
	sag (0.548145)
	tra (0.492368)
	hlv (0.417769)
	amn (0.417711)
	ssp (0.406559)
	sug (0.381874)
	sin (0.349895)
	rec (0.346141)
	mga (0.32041)
	lnt (0.284616)
	nms (0.213858)
	mas (0.210305)
	ctl (0.153069)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)