Ss1.1-risp20_f24.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAAACGGAAGTGTAGGTGACGGTCTGAGGCAGCACCGCCAAGCTGGGAACCGGGGAGA TGGCCGAGACTGACCCCAAGACCGTGCAGGATCTCACCTCGGTGGTGCAGACACTCCTGC AACAGATGCAAGATAAATTTCAGACCATGTCCGACCAGATCATTGGAAGAATTGATGACA TGAGCAGTCGCATTGATGACCTGGAAAAAAACATTGCAGACCTCATGACACAGGCTGGGG TGGAAGAGCTGGAAGGCGACAACAAGATCCCCGCCACACAGAAAAGTTGAAGGTGGCTCA ATTGCACTGAAATCCAGAACACCCTTTTTACAAGCCAAGAGACGACGGATGGCTTTTTGC AACTAACTACTATGTGTAGACAGGTTTTATATTATAAAGTGTGCATTCTTCTTGCCACAT ACTATAGAGTTAGGTTATAGAGTGACCTCTCCCCCCCCACCCCCCGTGTTTCCTGAACAT GGTAACTTCCTATCTTGGACCTTGGTCAGTTGTGCTATTAAACACTAAAACTTTGGCAGT AAAAAAAAAAAAACTCTGGAGTAGAAGAGTACCCTGCAGAATGCCATGCACTTGCAAGTG GACGTAATTGGATGGACAGCAGGGGAGTTCTTCCCCCTCAGTATCAGGAAATATATGCTA AAGACATCCTGAAACCCTGGACCTTTTCCCATAAATAAGAGGTTTGTTTGTAAAATGGGA AATCTACCTGTAACAAATAAACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAAACGGAAGTGTAGGTGACGGTCTGAGGCAGCACCGCCAAGCTGGGAACCGGGGAGA TGGCCGAGACTGACCCCAAGACCGTGCAGGATCTCACCTCGGTGGTGCAGACACTCCTGC AACAGATGCAAGATAAATTTCAGACCATGTCCGACCAGATCATTGGAAGAATTGATGACA TGAGCAGTCGCATTGATGACCTGGAAAAAAACATTGCAGACCTCATGACACAGGCTGGGG TGGAAGAGCTGGAAGGCGACAACAAGATCCCCGCCACACAGAAAAGTTGAAGGTGGCTCA ATTGCACTGAAATCCAGAACACCCTTTTTACAAGCCAAGAGACGACGGATGGCTTTTTGC AACTAACTACTATGTGTAGACAGGTTTTATATTATAAAGTGTGCATTCTTCTTGCCACAT ACTATAGAGTTAGGTTATAGAGTGACCTCTCCCCCCCCACCCCCCGTGTTTCCTGAACAT GGTAACTTCCTATCTTGGACCTTGGTCAGTTGTGCTATTAAACACTAAAACTTTGGCAGT AAAAAAAAAAAAACTCTGGAGTAGAAGAGTACCCTGCAGAATGCCATGCACTTGCAAGTG GACGTAATTGGATGGACAGCAGGGGAGTTCTTCCCCCTCAGTATCAGGAAATATATGCTA AAGACATCCTGAAACCCTGGACCTTTTCCCATAAATAAGAGGTTTGTTTGTAAAATGGGA AATCTACCTGTAACAAATAAACAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 2-106, gnl|bosTau2|chr18 (11290997-11290893) | |
| 2-106, gnl|canFam2|chr5 (71479276-71479366) | |
| 2-106, gnl|dasNov1|scaffold_38349 (3739-3647) | |
| 2-106, gnl|echTel1|scaffold_37610 (125-34) | |
| 2-106, gnl|Hg17|chr16 (82399125-82399229) | |
| 2-106, gnl|hg17|chr5 (111727217-111727317) | |
| 2-106, gnl|loxAfr1|scaffold_32759 (24273-24365) | |
| 2-106, gnl|mm7|chr8 (117967052-117966954) | |
| 2-106, gnl|Mm7|chr8 (117966949-117967054) | |
| 2-106, gnl|monDom2|scaffold_9 (15199184-15199283) | |
| 2-106, gnl|oryCun1|scaffold_104729 (5543-5631) | |
| 2-106, gnl|panTro1|chr4 (117834134-117834234) | |
| 2-106, gnl|rheMac2|chr6 (108635936-108636036) | |
| 2-106, gnl|rn3|chr19 (49594514-49594425) | |
| 291-489, gnl|bosTau2|chr18 (11288247-11288053) | |
| 291-489, gnl|Hg17|chr16 (82402525-82402707) | |
| 291-489, gnl|Mm7|chr8 (117970466-117970634) | |
| 564-733, gnl|bosTau2|chr1 (43385456-43385280) | |
| 564-733, gnl|canFam2|chr33 (32774155-32774558) | |
| 564-733, gnl|canFam2|chr33 (32774126-32774574) | |
| 564-733, gnl|dasNov1|scaffold_16185 (50724-50346) | |
| 564-733, gnl|dasNov1|scaffold_16185 (50744-50346) | |
| 564-733, gnl|echTel1|scaffold_101714 (3336-2967) | |
| 564-733, gnl|echTel1|scaffold_101714 (3366-2952) | |
| 564-733, gnl|hg17|chr2 (235836006-235836404) | |
| 564-733, gnl|hg17|chr3 (197921492-197921860) | |
| 564-733, gnl|Hg17|chr3 (197921814-197921650) | |
| 564-733, gnl|loxAfr1|scaffold_12045 (36285-35903) | |
| 564-733, gnl|loxAfr1|scaffold_12045 (36319-35887) | |
| 564-733, gnl|mm7|chr16 (31782551-31782197) | |
| 564-733, gnl|mm7|chr16 (31782577-31782199) | |
| 564-733, gnl|Mm7|chr16 (31782238-31782397) | |
| 564-733, gnl|oryCun1|scaffold_153286 (1452-1094) | |
| 564-733, gnl|oryCun1|scaffold_153286 (1481-1086) | |
| 564-733, gnl|panTro1|chr13 (126555723-126556125) | |
| 564-733, gnl|panTro1|chr2 (202103345-202103713) | |
| 564-733, gnl|rheMac2|chr12 (99007608-99008011) | |
| 564-733, gnl|rheMac2|chr2 (188727455-188727091) | |
| 564-733, gnl|rn3|chr11 (70557658-70558012) | |
| 564-733, gnl|rn3|chr11 (70557652-70558010) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-106, gnl|bosTau2|chr18 (11290997-11290893) | |
| 2-106, gnl|canFam2|chr5 (71479276-71479366) | |
| 2-106, gnl|dasNov1|scaffold_38349 (3739-3647) | |
| 2-106, gnl|echTel1|scaffold_37610 (125-34) | |
| 2-106, gnl|Hg17|chr16 (82399125-82399229) | |
| 2-106, gnl|hg17|chr5 (111727217-111727317) | |
| 2-106, gnl|loxAfr1|scaffold_32759 (24273-24365) | |
| 2-106, gnl|mm7|chr8 (117967052-117966954) | |
| 2-106, gnl|Mm7|chr8 (117966949-117967054) | |
| 2-106, gnl|monDom2|scaffold_9 (15199184-15199283) | |
| 2-106, gnl|oryCun1|scaffold_104729 (5543-5631) | |
| 2-106, gnl|panTro1|chr4 (117834134-117834234) | |
| 2-106, gnl|rheMac2|chr6 (108635936-108636036) | |
| 2-106, gnl|rn3|chr19 (49594514-49594425) | |
| 291-489, gnl|bosTau2|chr18 (11288247-11288053) | |
| 291-489, gnl|Hg17|chr16 (82402525-82402707) | |
| 291-489, gnl|Mm7|chr8 (117970466-117970634) | |
| 564-733, gnl|bosTau2|chr1 (43385456-43385280) | |
| 564-733, gnl|canFam2|chr33 (32774155-32774558) | |
| 564-733, gnl|canFam2|chr33 (32774126-32774574) | |
| 564-733, gnl|dasNov1|scaffold_16185 (50724-50346) | |
| 564-733, gnl|dasNov1|scaffold_16185 (50744-50346) | |
| 564-733, gnl|echTel1|scaffold_101714 (3336-2967) | |
| 564-733, gnl|echTel1|scaffold_101714 (3366-2952) | |
| 564-733, gnl|hg17|chr2 (235836006-235836404) | |
| 564-733, gnl|hg17|chr3 (197921492-197921860) | |
| 564-733, gnl|Hg17|chr3 (197921814-197921650) | |
| 564-733, gnl|loxAfr1|scaffold_12045 (36285-35903) | |
| 564-733, gnl|loxAfr1|scaffold_12045 (36319-35887) | |
| 564-733, gnl|mm7|chr16 (31782551-31782197) | |
| 564-733, gnl|mm7|chr16 (31782577-31782199) | |
| 564-733, gnl|Mm7|chr16 (31782238-31782397) | |
| 564-733, gnl|oryCun1|scaffold_153286 (1452-1094) | |
| 564-733, gnl|oryCun1|scaffold_153286 (1481-1086) | |
| 564-733, gnl|panTro1|chr13 (126555723-126556125) | |
| 564-733, gnl|panTro1|chr2 (202103345-202103713) | |
| 564-733, gnl|rheMac2|chr12 (99007608-99008011) | |
| 564-733, gnl|rheMac2|chr2 (188727455-188727091) | |
| 564-733, gnl|rn3|chr11 (70557658-70558012) | |
| 564-733, gnl|rn3|chr11 (70557652-70558010) |
| Expressed library(ies): 45 entry(ies) | More info |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
| nmm (0.664011) | |
| cga (0.558191) | |
| ova (0.516529) | |
| cje (0.495704) | |
| jej (0.494609) | |
| mgp (0.461361) | |
| eje (0.395335) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| nje (0.33184) | |
| cki (0.330469) | |
| nco (0.323468) | |
| isp (0.300752) | |
| hlv (0.278513) | |
| che (0.272628) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.664011) | |
| cga (0.558191) | |
| ova (0.516529) | |
| cje (0.495704) | |
| jej (0.494609) | |
| mgp (0.461361) | |
| eje (0.395335) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| nje (0.33184) | |
| cki (0.330469) | |
| nco (0.323468) | |
| isp (0.300752) | |
| hlv (0.278513) | |
| che (0.272628) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |