Non-Coding RNA Search

Ss1.1-risp21_o12.5

Sequence:


               
               CCTGCCAGTAGCATATGCTTGTCTCAAAGATAAGCCATGCATGTCTAAGTACGCACGGCC
GGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTC
CTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTGGTTTGCCACTGAAAGAAAGTGAA
AATGTCCGTTTGAGTAAAACTGAAAACAAACTTACTCTGAGTATTAAGAATGCAAAGAAG
GAGAATGGAGGAAAATACACTGTTATTCTCGATAACGCAGTTTGTCGAAACTCATTCCCC
ATCACAGTCATCACACTTGGCCCACCATCAAAGCCTAAAGGGCCCATTCGCTTTGATGAA
ATCAAGGCTGACAGTGTCATCATGTCATGGGACGTGCCTGAAGATGATGGAGGAGGAGAA
ATTACCTGTTACAGCATTGAGAAGAGAGAAGCTTCACAAACTAATTGGAAGATGGTGTGT
TCAAGTGTTGCCCGAACAACTTTCAAGGTTCCTAATCTAGTCAAAGATGCTGAATACCAG
TTTAGAGTTAGAGCAGAAAACAGATATGGAGTCAGCCAGCCACTTGTCTCCAACAGTATT
GTGGCAAAACACCAGTTCAGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCAGTAGCATATGCTTGTCTCAAAGATAAGCCATGCATGTCTAAGTACGCACGGCC
GGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTC
CTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTGGTTTGCCACTGAAAGAAAGTGAA
AATGTCCGTTTGAGTAAAACTGAAAACAAACTTACTCTGAGTATTAAGAATGCAAAGAAG
GAGAATGGAGGAAAATACACTGTTATTCTCGATAACGCAGTTTGTCGAAACTCATTCCCC
ATCACAGTCATCACACTTGGCCCACCATCAAAGCCTAAAGGGCCCATTCGCTTTGATGAA
ATCAAGGCTGACAGTGTCATCATGTCATGGGACGTGCCTGAAGATGATGGAGGAGGAGAA
ATTACCTGTTACAGCATTGAGAAGAGAGAAGCTTCACAAACTAATTGGAAGATGGTGTGT
TCAAGTGTTGCCCGAACAACTTTCAAGGTTCCTAATCTAGTCAAAGATGCTGAATACCAG
TTTAGAGTTAGAGCAGAAAACAGATATGGAGTCAGCCAGCCACTTGTCTCCAACAGTATT
GTGGCAAAACACCAGTTCAGGATT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-151, gnl|bosTau2|chr15 (6149826-6149677)
               

               
               2-151, gnl|Mm7|chr16 (18083050-18082912)
               


               
               157-624, gnl|bosTau2|chr2 (7852342-7852809)
               

               
               157-624, gnl|Hg17|chr2 (179242629-179242162)
               

               
               157-624, gnl|Mm7|chr2 (76573604-76573137)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-151, gnl|bosTau2|chr15 (6149826-6149677)
               

               
               2-151, gnl|Mm7|chr16 (18083050-18082912)
               


               
               157-624, gnl|bosTau2|chr2 (7852342-7852809)
               

               
               157-624, gnl|Hg17|chr2 (179242629-179242162)
               

               
               157-624, gnl|Mm7|chr2 (76573604-76573137)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	2-151, gnl\|bosTau2\|chr15 (6149826-6149677)
	2-151, gnl\|Mm7\|chr16 (18083050-18082912)

	157-624, gnl\|bosTau2\|chr2 (7852342-7852809)
	157-624, gnl\|Hg17\|chr2 (179242629-179242162)
	157-624, gnl\|Mm7\|chr2 (76573604-76573137)