Non-Coding RNA Search

Ss1.1-risp23_c19.5

Sequence:


               
               GCCCCCACAGAATATAATTGATAATGTCTATATAAAATGGGGTTAAATCCTTCCTAAATT
TTCTGATTCATCTCTTTGAAAATACTGCACTTATCAATGAAAAAGTGCTTCCTTTACCAA
ACTCTGGAAGCATAATTCAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGT
GCACGCGCAAATGTACATGTGAAATGCTTGTCCTGTTTTCTCTTGCAGCCAATATAGGAA
CTCAAAAGTGCTCTTTATGTTGTACTTTTTATCATGACAAAAATTATTGGCCACATAATT
GGAGAAGTATTAAAGCCACAAACAATTGTGGTTATTTGGTCCAGTTATAGCACAATATTG
TGCCATTTCCAAGGGACTTTACAGGTGAATTCCCACATTTGGCATCAAATGTAAAGGGAA
AAAAGTGCTGAGGGAATTTGCTAATATTTACGTGTTATTCTCAGGATGTCCTACCCTCAT
CTCAGAATATAGAAAATAGGAATTTGCATTCATGAGCATTTACCAAGAGGTTGCCATTAC
TTATTGATAATGTAAGACAATATCTAAAATAACTAAAAGGAAAAAATGAAGGTTCACCAT
TCAGCCACCCAAAGACTGTCAACATTGAGATGATGCCAGGCATGGATTGGAATTGCTGCT
TTAAAAGAGAGGCTTCAAATGCAAATGTTTAATTTCATTTTGGATAAAATGGTCAGAGAA
TCTGTTTAGCCCCAACTTCAACTGAGTTTAAATCAGAAACACCTTTATGTAACCAGATAA
AATATAGCTGAGATTTTATATTCAGTGATTTTGTATTTATGGGTACTACTTATGGAGAAG
TTATTTAGTGATACAGAGAAGGTCTGTTTTCAAATGTTTTGTGATGATATTTGATTCAGA
AATTGTAAAAGTCAACCTCATACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCCACAGAATATAATTGATAATGTCTATATAAAATGGGGTTAAATCCTTCCTAAATT
TTCTGATTCATCTCTTTGAAAATACTGCACTTATCAATGAAAAAGTGCTTCCTTTACCAA
ACTCTGGAAGCATAATTCAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGT
GCACGCGCAAATGTACATGTGAAATGCTTGTCCTGTTTTCTCTTGCAGCCAATATAGGAA
CTCAAAAGTGCTCTTTATGTTGTACTTTTTATCATGACAAAAATTATTGGCCACATAATT
GGAGAAGTATTAAAGCCACAAACAATTGTGGTTATTTGGTCCAGTTATAGCACAATATTG
TGCCATTTCCAAGGGACTTTACAGGTGAATTCCCACATTTGGCATCAAATGTAAAGGGAA
AAAAGTGCTGAGGGAATTTGCTAATATTTACGTGTTATTCTCAGGATGTCCTACCCTCAT
CTCAGAATATAGAAAATAGGAATTTGCATTCATGAGCATTTACCAAGAGGTTGCCATTAC
TTATTGATAATGTAAGACAATATCTAAAATAACTAAAAGGAAAAAATGAAGGTTCACCAT
TCAGCCACCCAAAGACTGTCAACATTGAGATGATGCCAGGCATGGATTGGAATTGCTGCT
TTAAAAGAGAGGCTTCAAATGCAAATGTTTAATTTCATTTTGGATAAAATGGTCAGAGAA
TCTGTTTAGCCCCAACTTCAACTGAGTTTAAATCAGAAACACCTTTATGTAACCAGATAA
AATATAGCTGAGATTTTATATTCAGTGATTTTGTATTTATGGGTACTACTTATGGAGAAG
TTATTTAGTGATACAGAGAAGGTCTGTTTTCAAATGTTTTGTGATGATATTTGATTCAGA
AATTGTAAAAGTCAACCTCATACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               82-267, - strand, RNAz p=0.99998
               

               
               298-448, + strand, RNAz p=0.99726

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-267, - strand, RNAz p=0.99998
               

               
               298-448, + strand, RNAz p=0.99726

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004621, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004621, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-924, gnl|bosTau2|chr11 (86915678-86916615)
               

               
               3-924, gnl|Hg17|chr11 (100828381-100827456)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-924, gnl|bosTau2|chr11 (86915678-86916615)
               

               
               3-924, gnl|Hg17|chr11 (100828381-100827456)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               clu (0.119646)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               clu (0.119646)

	82-267, - strand, RNAz p=0.99998
	298-448, + strand, RNAz p=0.99726

	3-924, gnl\|bosTau2\|chr11 (86915678-86916615)
	3-924, gnl\|Hg17\|chr11 (100828381-100827456)

	mgp (0.230681)
	gul (0.177588)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	clu (0.119646)