Non-Coding RNA Search

Ss1.1-risp23_k19.5

Sequence:


               
               ACCTACTCTCTATAAAAGGAGTGTCACTAGATGCCAGTCAGTAATTACATATCAAGGACT
CCTCTTCTAGCTAAGTGATCATTGAAAGAGGGTGTTGACTTTCTCATGAATGTCAAGGCT
AGAGTCAAAGTGAGCATGTGCTTTGTGCGTATTCGCACGTGGACACACGGCTGCCACAGA
CACACACAGCAGCCTTTCCCCCTTCGAGTCGCCTCTTACCTATGCCTCTCCGTGTGTTTC
TGGGTTGTGCCTCGTTTGCTTAGTGGTGGTATGCAGTGATGCAGATTCAGCACACAAGCG
ACACGAAGAACTGTTAAATCCCCCAGTGTCTCCTGAGTCCCGTAGGTAAAAAGAAAGCTG
GAGCCGTGAGCACCGTGTTCAGGTCAACACACGCCAAGCATAAGCCAAGCCACGAGGTAA
ACCTACCTCTAGACGGTTGGTTCACCGTCTCCTCTGCCAGACCTTTTGAGTATTGTCATC
CTCACAATACTAGGGAAGAAAATTAGACAGGAGTTTGCTTTATAATTCTTGTTGTTCCTC
GGGACAGGTTATTTTGTGTTTGTTCTTGCTTAGACCTGGTTGCTGCGTTTTGAAGAGCAG
CTAGCCGCTTTGCTTTTTTTGCCTCTTCGCATGGCTTTCTTCCTCCTGTTCCCCTGGCCC
TCTGGTTACAGAGCTCCCCCTCACACCCCCACAGGTGGAGACTGGAGGTGTCAATGAAGA
CCCAGCTGCTGCCTGATTTCATTCATTTCTGTAGCCAAAGTTGTTCATTAAAATTCCCAA
TCTAAGTCATGAAAAAATACCAAATAGGAGCACCTTTCAGTTACTTAAAAATCTTACTTC
CCTCTGCTTTATTCTCATAGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTACTCTCTATAAAAGGAGTGTCACTAGATGCCAGTCAGTAATTACATATCAAGGACT
CCTCTTCTAGCTAAGTGATCATTGAAAGAGGGTGTTGACTTTCTCATGAATGTCAAGGCT
AGAGTCAAAGTGAGCATGTGCTTTGTGCGTATTCGCACGTGGACACACGGCTGCCACAGA
CACACACAGCAGCCTTTCCCCCTTCGAGTCGCCTCTTACCTATGCCTCTCCGTGTGTTTC
TGGGTTGTGCCTCGTTTGCTTAGTGGTGGTATGCAGTGATGCAGATTCAGCACACAAGCG
ACACGAAGAACTGTTAAATCCCCCAGTGTCTCCTGAGTCCCGTAGGTAAAAAGAAAGCTG
GAGCCGTGAGCACCGTGTTCAGGTCAACACACGCCAAGCATAAGCCAAGCCACGAGGTAA
ACCTACCTCTAGACGGTTGGTTCACCGTCTCCTCTGCCAGACCTTTTGAGTATTGTCATC
CTCACAATACTAGGGAAGAAAATTAGACAGGAGTTTGCTTTATAATTCTTGTTGTTCCTC
GGGACAGGTTATTTTGTGTTTGTTCTTGCTTAGACCTGGTTGCTGCGTTTTGAAGAGCAG
CTAGCCGCTTTGCTTTTTTTGCCTCTTCGCATGGCTTTCTTCCTCCTGTTCCCCTGGCCC
TCTGGTTACAGAGCTCCCCCTCACACCCCCACAGGTGGAGACTGGAGGTGTCAATGAAGA
CCCAGCTGCTGCCTGATTTCATTCATTTCTGTAGCCAAAGTTGTTCATTAAAATTCCCAA
TCTAAGTCATGAAAAAATACCAAATAGGAGCACCTTTCAGTTACTTAAAAATCTTACTTC
CCTCTGCTTTATTCTCATAGACAT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-614, gnl|bosTau2|chr6 (39115672-39116294)
               

               
               1-614, gnl|Hg17|chr4 (56140440-56139835)
               


               
               640-864, gnl|bosTau2|chr6 (39116360-39116590)
               

               
               640-864, gnl|Hg17|chr4 (56139771-56139547)
               

               
               640-864, gnl|Mm7|chr5 (76146681-76146486)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-614, gnl|bosTau2|chr6 (39115672-39116294)
               

               
               1-614, gnl|Hg17|chr4 (56140440-56139835)
               


               
               640-864, gnl|bosTau2|chr6 (39116360-39116590)
               

               
               640-864, gnl|Hg17|chr4 (56139771-56139547)
               

               
               640-864, gnl|Mm7|chr5 (76146681-76146486)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               liv (0.292569)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               liv (0.292569)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

	1-614, gnl\|bosTau2\|chr6 (39115672-39116294)
	1-614, gnl\|Hg17\|chr4 (56140440-56139835)

	640-864, gnl\|bosTau2\|chr6 (39116360-39116590)
	640-864, gnl\|Hg17\|chr4 (56139771-56139547)
	640-864, gnl\|Mm7\|chr5 (76146681-76146486)

	elu (0.385356)
	liv (0.292569)
	cut (0.169924)
	isp (0.150376)
	csk (0.140746)
	nmm (0.132802)
	ldo (0.0970026)