Non-Coding RNA Search

Ss1.1-risp24_l6.5

Sequence:


               
               GAAACGTCACAGGTTTATATTTATGTCAAATTTGTCCCTGAGATGCTTTATATTTAATGT
GAAAGATCAAGGTGAACTTGTTTCGTGTACTTATAATCCAACAGAGTGCTAAAGCAGAGC
AGACCAAACACATTCTGAGGGCCAAACGTAACTGTAGTACCTCAGCAGATGGCCTGGTTT
TCACAACATTTTTCCTAGGTGAAGAAGGACATTCGAAGCTTAATTTTGTATTTAAAATCC
ACTCATGATATTATTCAAATAACTTTAATGAAGAGATTTTCTAAAAACTACTACATGTTA
GTGTTCTGTTCAGCAGATGAAAAATGAAAAATACTGAAAAAGAACTTGATCCAGTTAAAA
TTTGTTGTTTTAAGAAATTAATATATTTCTTGAAAACATTTTTTAATCATACACTGCTGA
GCATTCAAATGTTAGATAAATATGTTTATTTAAAACCGTCCTCCATGAAGCACTACATTA
ATACCTTAGCAGAATCAATTTGATTTCATATAAATCGGGCTGCATTCAAATTTATCACTC
AGTCTCAACGGTCAGTCCATCCATCCTTATGTTAGAGTAAAATCATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACGTCACAGGTTTATATTTATGTCAAATTTGTCCCTGAGATGCTTTATATTTAATGT
GAAAGATCAAGGTGAACTTGTTTCGTGTACTTATAATCCAACAGAGTGCTAAAGCAGAGC
AGACCAAACACATTCTGAGGGCCAAACGTAACTGTAGTACCTCAGCAGATGGCCTGGTTT
TCACAACATTTTTCCTAGGTGAAGAAGGACATTCGAAGCTTAATTTTGTATTTAAAATCC
ACTCATGATATTATTCAAATAACTTTAATGAAGAGATTTTCTAAAAACTACTACATGTTA
GTGTTCTGTTCAGCAGATGAAAAATGAAAAATACTGAAAAAGAACTTGATCCAGTTAAAA
TTTGTTGTTTTAAGAAATTAATATATTTCTTGAAAACATTTTTTAATCATACACTGCTGA
GCATTCAAATGTTAGATAAATATGTTTATTTAAAACCGTCCTCCATGAAGCACTACATTA
ATACCTTAGCAGAATCAATTTGATTTCATATAAATCGGGCTGCATTCAAATTTATCACTC
AGTCTCAACGGTCAGTCCATCCATCCTTATGTTAGAGTAAAATCATTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-540, gnl|bosTau2|chr6 (43592974-43592419)
               

               
               3-540, gnl|Hg17|chr4 (68448923-68449461)
               

               
               3-540, gnl|Mm7|chr5 (86135052-86135548)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-540, gnl|bosTau2|chr6 (43592974-43592419)
               

               
               3-540, gnl|Hg17|chr4 (68448923-68449461)
               

               
               3-540, gnl|Mm7|chr5 (86135052-86135548)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               fco (0.157208)
               

               
               isp (0.150376)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fco (0.157208)
               

               
               isp (0.150376)

	3-540, gnl\|bosTau2\|chr6 (43592974-43592419)
	3-540, gnl\|Hg17\|chr4 (68448923-68449461)
	3-540, gnl\|Mm7\|chr5 (86135052-86135548)