Non-Coding RNA Search

Ss1.1-risp26_d21.5

Sequence:


               
               TCTAATCGTATTAAACATGAAATCACCAAATTGTTACAAGAATCAGTTTACTGTTTATAC
TACTAGTATTTGACAAAGCAATTGAAACTAAGGCTTTCAGTTGAGAAGTTGATGGAATTA
ATGCACTCTGTAGTCAAGCATTTTTTTCTTAGGCAAAATGTTTGGGGAAATGTGGCATGA
AAGTAGATACTCGCATCGACCCTTGTGGAGGCAGTAGGAGTACCCTAAAGCCAAGACGTG
CACGTGTTTACGCAAAATAGAAGGTTAAGCTTTCCAAATACATACTGTATAAATACGAAG
GATCTAAATTTTCTAGTGCACCAAAAGCAGGTTTAATTTAAATTGCTCATTACCAAATCC
AGAGTCTACCAGCTAACACTTATATAACTTATGTATGACAGTCCAAGGTTTCTCCAGTTT
TGTTTTTTTGGAGCGGGGGTTGTTTGCATTTTGGAATAAGATATCATTATTTCTTGATAA
CAGCTATTGTATTTTCAAGTGATTTTTAATAGAATAAAATGTATTACTAAATTATAATCC
ACTATTAGCAAAAATTACTCAAAACTTTTTGGACTTACAAACTTTCTTAAGTACATAAGG
TAATTTCTAAACATTGTCACATATTTAATACCTTTATTTAAAATGGAAAAATTAATTCAT
TTTGTAGACTACATTTAGCAATAGTCATATGGTACATGTGTGATTTTTTTTATCTGTGGT
TTCTTTAATAATTATCTAAATTGAAATGCCTTTGCTATGAAAAGAGTTAAAATTATAGAC
ATACCTGGTACTCAATGCTGAATCAAACTGGTTCACCTAGGCGTAGTACTCTCCTTTCTG
TATTTCGCTGCACTAATTGCAGGGGGTGGGAGAGAAGGAAGAAGAATTAATTCACAGTAG
AAGTGGATGGTAGGTGCGGCACAGAGCAACACAATGTTGATGTCTCATTGCTTATGATTT
TGCTGTCCCTTCTTGGGAAAAGATACCACATTGGAAAAACACAGCTCCCGGGGTAAAAAA
TTATATCTTTAAAAAATGCTATTATTGAGAAATTTTGATTACCAAATACATCTTTTATGG
CTTATATTGTAGAAGTGTATATAAAAACGTTTAGTTTTCCTCGTGGAAATTGTGTATGTA
GAGAAAAGTTGGAATAGCTCTCCCCAAATCATATGTGAATGGAGAACCACGTACGACTGT
ACATGACGTGCAATAAACCAGCTGGAAAAAGTGCATGTGCTTCATCCTCTTCCAGGCAAC
TGTGGCTGAAAATGCTGCCTATTGCCCCTCCCCTGAAAAAGCCACATGTGTGTAAATGTC
AGAATAAAGAATGCACATTTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAATCGTATTAAACATGAAATCACCAAATTGTTACAAGAATCAGTTTACTGTTTATAC
TACTAGTATTTGACAAAGCAATTGAAACTAAGGCTTTCAGTTGAGAAGTTGATGGAATTA
ATGCACTCTGTAGTCAAGCATTTTTTTCTTAGGCAAAATGTTTGGGGAAATGTGGCATGA
AAGTAGATACTCGCATCGACCCTTGTGGAGGCAGTAGGAGTACCCTAAAGCCAAGACGTG
CACGTGTTTACGCAAAATAGAAGGTTAAGCTTTCCAAATACATACTGTATAAATACGAAG
GATCTAAATTTTCTAGTGCACCAAAAGCAGGTTTAATTTAAATTGCTCATTACCAAATCC
AGAGTCTACCAGCTAACACTTATATAACTTATGTATGACAGTCCAAGGTTTCTCCAGTTT
TGTTTTTTTGGAGCGGGGGTTGTTTGCATTTTGGAATAAGATATCATTATTTCTTGATAA
CAGCTATTGTATTTTCAAGTGATTTTTAATAGAATAAAATGTATTACTAAATTATAATCC
ACTATTAGCAAAAATTACTCAAAACTTTTTGGACTTACAAACTTTCTTAAGTACATAAGG
TAATTTCTAAACATTGTCACATATTTAATACCTTTATTTAAAATGGAAAAATTAATTCAT
TTTGTAGACTACATTTAGCAATAGTCATATGGTACATGTGTGATTTTTTTTATCTGTGGT
TTCTTTAATAATTATCTAAATTGAAATGCCTTTGCTATGAAAAGAGTTAAAATTATAGAC
ATACCTGGTACTCAATGCTGAATCAAACTGGTTCACCTAGGCGTAGTACTCTCCTTTCTG
TATTTCGCTGCACTAATTGCAGGGGGTGGGAGAGAAGGAAGAAGAATTAATTCACAGTAG
AAGTGGATGGTAGGTGCGGCACAGAGCAACACAATGTTGATGTCTCATTGCTTATGATTT
TGCTGTCCCTTCTTGGGAAAAGATACCACATTGGAAAAACACAGCTCCCGGGGTAAAAAA
TTATATCTTTAAAAAATGCTATTATTGAGAAATTTTGATTACCAAATACATCTTTTATGG
CTTATATTGTAGAAGTGTATATAAAAACGTTTAGTTTTCCTCGTGGAAATTGTGTATGTA
GAGAAAAGTTGGAATAGCTCTCCCCAAATCATATGTGAATGGAGAACCACGTACGACTGT
ACATGACGTGCAATAAACCAGCTGGAAAAAGTGCATGTGCTTCATCCTCTTCCAGGCAAC
TGTGGCTGAAAATGCTGCCTATTGCCCCTCCCCTGAAAAAGCCACATGTGTGTAAATGTC
AGAATAAAGAATGCACATTTCATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-1278, gnl|bosTau2|chr9 (61793961-61792646)
               

               
               3-1278, gnl|Hg17|chr6 (163966849-163968164)
               

               
               3-1278, gnl|Mm7|chr17 (8923873-8922589)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1278, gnl|bosTau2|chr9 (61793961-61792646)
               

               
               3-1278, gnl|Hg17|chr6 (163966849-163968164)
               

               
               3-1278, gnl|Mm7|chr17 (8923873-8922589)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               spc (0.906927)
               

               
               hea (0.613497)
               

               
               fbs (0.526039)
               

               
               liv (0.438853)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.906927)
               

               
               hea (0.613497)
               

               
               fbs (0.526039)
               

               
               liv (0.438853)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	3-1278, gnl\|bosTau2\|chr9 (61793961-61792646)
	3-1278, gnl\|Hg17\|chr6 (163966849-163968164)
	3-1278, gnl\|Mm7\|chr17 (8923873-8922589)

	spc (0.906927)
	hea (0.613497)
	fbs (0.526039)
	liv (0.438853)
	isp (0.300752)
	ski (0.29347)
	spl (0.286369)
	hlv (0.278513)
	sug (0.254582)
	nms (0.213858)
	tes (0.207814)
	gul (0.177588)
	ton (0.1755)
	fhi (0.169578)
	fco (0.157208)
	fat (0.147427)
	lnt (0.142308)
	cst (0.140036)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	eru (0.120048)
	jca (0.11396)