Ss1.1-risp26_d5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTGAGGAAGGCCGTGCACCATGCCCCAAAACGTGATCCTGCCGGGCCCTGCGCCCTGG GGCTTCAGACTCTCGGGGGGCATAGACTTCAACCAGCCCTTGATCATCACCAGGATCACT CCAGGAAGCAAGGCAGCAGCTGCCAACCTGTGTCCTGGAGATGTCATCCTGGCCATTGAT GGCTACGGGACGGAGTCCATGACTCATGCTGATGCACAGGACAGGATTAAAGCAGCAGCA CACCAGCTGTGTCTCAAAATTGACAGGGCGGAAACTCGCTTATGGTCTCCACAGGTAACT GAAGATGGGAAGGCTCATCCTTTCAAAATCAACTTAGAATCAGAACCACAGGATGTGAAC TACTTTGAACACAAGCACAATATTCGGCCCAAACCTTTCATAATCCCAGGCCGAAGCAGT GGATGCAGTACTCCGTCCGGTATTGACGGTGGCAGTGGACGTAGCACCCCTTCTTCTGTC AGTACTCTTAGTACTATTTGCCCAGGTGACTTGAAAGTTGCTGCTAAGATGGCCCCTAAC ATTCCTTTGGAAATGGAACTTCCTGGTGTGAAGATTGTACATGCTCAGTTTAATACACCT ATGCAGTTGTACTCAGATGACAATATTATGGAAACACTTCAGGGTCAGGTTTCAACAGCT CTAGGGGAAACACCCTCAATGAGTGAACCCACCACTGCCTCCGTGCCCCCACAATCAGAT GTGTACCGGATGCTCCATGACAACCGGAATGAACCTACTCAGCCTCGCCAGTCAGGCTCC TTCAGAGTGCTCCAGGAACTAGTTAATGATGGCCCTGATGACCGTCCTGCTGGAACTCGG AGTGTAAGAGCTCCAGTTACAAAAATCCATGGTGGTGCTGGCGGCACTCAGAAGATGCCA CTCTGTGACAAATGTGGGAGTGGCATTGTCGGTGCGGTCGTGAAGGCGCGGGACAAGTAC AGACATCCAGAGTGCTTCGTATGTGCTGACTGCAACCTTAACCTCAAACAAAAGGGCTAC TTCTTCGTGGAGGGGGAGCTGTACTGCGAAACTCATGCCCGAGCCCGCATGAGGCCCCCA GAGGGCTATGACACAGTCACTCTCTATCCCAAAGCTTAAATCTTAGGTCAGCGGAGCATG CCCTCACCTCCGTGCACCTACCCCAGTTAGTGGCTTGGGCAGAAGTCTAGCCAACTGCCG ACTCCCAATCTAGAACCTAGCTTTTGGATGTTTCTCTTGCTGTATTCTCAGGAGAAGGAA TAGGAGGCAGATGCCTGCTGTAACAGAAACACACATTCAACTCTTTTTATCTTTGGAGCT AGCGATAATTTAATGACATTTAAAGCAAAAATGTTTTGTGTCATACTCCACAGTTTACAT TTATATTATGACCACCAAACATGTAAACATCAAGATATTTGGGGGAGTCTAATTGTCTTT CCTTAACAAGTTGACTTTGCAATTGCAGTAAATGCCAAATGGCAGTCTTGTATTCTAACA CAACCTGCAGGTGTCTGTTATCTGTTTTAACTATTATAGTGCATGTCGGGGAGAGATTCC TTAGATCTCTCTAGTTTCATCTTCAAACAGTTATCCCACTGGATGCAACATACATAATAA ATACATAAAATATTTTTAAAATACCTAATGAAGTGGCACTCAATGAATTCAGATGAAATC AACATTCCAGTGAGAAGCTCCACTCATATTTTGTCTTGTACACTAACAACTCAGGTATTT TAAGAAAAATGTGGCTTCTTTAGCTTTTAGAACTAATTTACTCTTTCTTATGAGCCCACA ATTTCTGCTGATAGGAGGGGAAATTTTAAATTTGCAAAAGGTAATGTAGTCTCTTTAAGA TTAAAAGTTTCTTTTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTGAGGAAGGCCGTGCACCATGCCCCAAAACGTGATCCTGCCGGGCCCTGCGCCCTGG GGCTTCAGACTCTCGGGGGGCATAGACTTCAACCAGCCCTTGATCATCACCAGGATCACT CCAGGAAGCAAGGCAGCAGCTGCCAACCTGTGTCCTGGAGATGTCATCCTGGCCATTGAT GGCTACGGGACGGAGTCCATGACTCATGCTGATGCACAGGACAGGATTAAAGCAGCAGCA CACCAGCTGTGTCTCAAAATTGACAGGGCGGAAACTCGCTTATGGTCTCCACAGGTAACT GAAGATGGGAAGGCTCATCCTTTCAAAATCAACTTAGAATCAGAACCACAGGATGTGAAC TACTTTGAACACAAGCACAATATTCGGCCCAAACCTTTCATAATCCCAGGCCGAAGCAGT GGATGCAGTACTCCGTCCGGTATTGACGGTGGCAGTGGACGTAGCACCCCTTCTTCTGTC AGTACTCTTAGTACTATTTGCCCAGGTGACTTGAAAGTTGCTGCTAAGATGGCCCCTAAC ATTCCTTTGGAAATGGAACTTCCTGGTGTGAAGATTGTACATGCTCAGTTTAATACACCT ATGCAGTTGTACTCAGATGACAATATTATGGAAACACTTCAGGGTCAGGTTTCAACAGCT CTAGGGGAAACACCCTCAATGAGTGAACCCACCACTGCCTCCGTGCCCCCACAATCAGAT GTGTACCGGATGCTCCATGACAACCGGAATGAACCTACTCAGCCTCGCCAGTCAGGCTCC TTCAGAGTGCTCCAGGAACTAGTTAATGATGGCCCTGATGACCGTCCTGCTGGAACTCGG AGTGTAAGAGCTCCAGTTACAAAAATCCATGGTGGTGCTGGCGGCACTCAGAAGATGCCA CTCTGTGACAAATGTGGGAGTGGCATTGTCGGTGCGGTCGTGAAGGCGCGGGACAAGTAC AGACATCCAGAGTGCTTCGTATGTGCTGACTGCAACCTTAACCTCAAACAAAAGGGCTAC TTCTTCGTGGAGGGGGAGCTGTACTGCGAAACTCATGCCCGAGCCCGCATGAGGCCCCCA GAGGGCTATGACACAGTCACTCTCTATCCCAAAGCTTAAATCTTAGGTCAGCGGAGCATG CCCTCACCTCCGTGCACCTACCCCAGTTAGTGGCTTGGGCAGAAGTCTAGCCAACTGCCG ACTCCCAATCTAGAACCTAGCTTTTGGATGTTTCTCTTGCTGTATTCTCAGGAGAAGGAA TAGGAGGCAGATGCCTGCTGTAACAGAAACACACATTCAACTCTTTTTATCTTTGGAGCT AGCGATAATTTAATGACATTTAAAGCAAAAATGTTTTGTGTCATACTCCACAGTTTACAT TTATATTATGACCACCAAACATGTAAACATCAAGATATTTGGGGGAGTCTAATTGTCTTT CCTTAACAAGTTGACTTTGCAATTGCAGTAAATGCCAAATGGCAGTCTTGTATTCTAACA CAACCTGCAGGTGTCTGTTATCTGTTTTAACTATTATAGTGCATGTCGGGGAGAGATTCC TTAGATCTCTCTAGTTTCATCTTCAAACAGTTATCCCACTGGATGCAACATACATAATAA ATACATAAAATATTTTTAAAATACCTAATGAAGTGGCACTCAATGAATTCAGATGAAATC AACATTCCAGTGAGAAGCTCCACTCATATTTTGTCTTGTACACTAACAACTCAGGTATTT TAAGAAAAATGTGGCTTCTTTAGCTTTTAGAACTAATTTACTCTTTCTTATGAGCCCACA ATTTCTGCTGATAGGAGGGGAAATTTTAAATTTGCAAAAGGTAATGTAGTCTCTTTAAGA TTAAAAGTTTCTTTTGCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 114-232, + strand, RNAz p=0.864361 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 114-232, + strand, RNAz p=0.864361 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 114-267, gnl|bosTau2|chr27 (9419185-9419338) | |
| 114-267, gnl|Hg17|chr4 (186821475-186821322) | |
| 114-267, gnl|Mm7|chr8 (44674604-44674757) | |
| 417-683, gnl|bosTau2|chr27 (9433895-9434161) | |
| 417-683, gnl|canFam2|chr16 (48096707-48096317) | |
| 417-683, gnl|dasNov1|scaffold_31130 (15023-14661) | |
| 417-683, gnl|echTel1|scaffold_320713 (16602-16993) | |
| 417-683, gnl|galGal2|chr4 (61575141-61575540) | |
| 417-683, gnl|hg17|chr4 (186804504-186804895) | |
| 417-683, gnl|Hg17|chr4 (186804868-186804602) | |
| 417-683, gnl|loxAfr1|scaffold_6684 (43237-42847) | |
| 417-683, gnl|mm7|chr8 (44691924-44691534) | |
| 417-683, gnl|Mm7|chr8 (44691557-44691823) | |
| 417-683, gnl|monDom2|scaffold_9 (67875735-67876114) | |
| 417-683, gnl|oryCun1|scaffold_201080 (296730-296340) | |
| 417-683, gnl|panTro1|chr3 (205014281-205014672) | |
| 417-683, gnl|rheMac2|chr5 (177606790-177607179) | |
| 417-683, gnl|rn3|chr16 (49642823-49643212) | |
| 417-683, gnl|xenTro1|scaffold_99 (2190147-2190508) | |
| 692-827, gnl|bosTau2|chr27 (9435653-9435789) | |
| 692-827, gnl|canFam2|chr16 (48098383-48098261) | |
| 692-827, gnl|danRer3|chr14 (29222339-29222458) | |
| 692-827, gnl|echTel1|scaffold_195964 (4891-5013) | |
| 692-827, gnl|fr1|chrUn (13453585-13453478) | |
| 692-827, gnl|galGal2|chr4 (61572577-61572702) | |
| 692-827, gnl|hg17|chr4 (186802809-186802931) | |
| 692-827, gnl|Hg17|chr4 (186802950-186802815) | |
| 692-827, gnl|loxAfr1|scaffold_6684 (44899-44786) | |
| 692-827, gnl|mm7|chr8 (44693131-44693018) | |
| 692-827, gnl|Mm7|chr8 (44692997-44693131) | |
| 692-827, gnl|monDom2|scaffold_9 (67871539-67871661) | |
| 692-827, gnl|oryCun1|scaffold_201080 (298302-298183) | |
| 692-827, gnl|panTro1|chr3 (205012587-205012709) | |
| 692-827, gnl|rheMac2|chr5 (177605150-177605272) | |
| 692-827, gnl|rn3|chr16 (49641336-49641447) | |
| 692-827, gnl|tetNig1|chr18 (8009906-8009799) | |
| 692-827, gnl|xenTro1|scaffold_99 (2187392-2187504) | |
| 835-1088, gnl|bosTau2|chr18 (15851412-15851666) | |
| 835-1088, gnl|Hg17|chr14 (49587522-49587776) | |
| 835-1088, gnl|Mm7|chr5 (31453206-31453460) | |
| 1752-1884, gnl|bosTau2|chr27 (9440388-9440522) | |
| 1752-1884, gnl|Hg17|chr4 (186797948-186797818) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-267, gnl|bosTau2|chr27 (9419185-9419338) | |
| 114-267, gnl|Hg17|chr4 (186821475-186821322) | |
| 114-267, gnl|Mm7|chr8 (44674604-44674757) | |
| 417-683, gnl|bosTau2|chr27 (9433895-9434161) | |
| 417-683, gnl|canFam2|chr16 (48096707-48096317) | |
| 417-683, gnl|dasNov1|scaffold_31130 (15023-14661) | |
| 417-683, gnl|echTel1|scaffold_320713 (16602-16993) | |
| 417-683, gnl|galGal2|chr4 (61575141-61575540) | |
| 417-683, gnl|hg17|chr4 (186804504-186804895) | |
| 417-683, gnl|Hg17|chr4 (186804868-186804602) | |
| 417-683, gnl|loxAfr1|scaffold_6684 (43237-42847) | |
| 417-683, gnl|mm7|chr8 (44691924-44691534) | |
| 417-683, gnl|Mm7|chr8 (44691557-44691823) | |
| 417-683, gnl|monDom2|scaffold_9 (67875735-67876114) | |
| 417-683, gnl|oryCun1|scaffold_201080 (296730-296340) | |
| 417-683, gnl|panTro1|chr3 (205014281-205014672) | |
| 417-683, gnl|rheMac2|chr5 (177606790-177607179) | |
| 417-683, gnl|rn3|chr16 (49642823-49643212) | |
| 417-683, gnl|xenTro1|scaffold_99 (2190147-2190508) | |
| 692-827, gnl|bosTau2|chr27 (9435653-9435789) | |
| 692-827, gnl|canFam2|chr16 (48098383-48098261) | |
| 692-827, gnl|danRer3|chr14 (29222339-29222458) | |
| 692-827, gnl|echTel1|scaffold_195964 (4891-5013) | |
| 692-827, gnl|fr1|chrUn (13453585-13453478) | |
| 692-827, gnl|galGal2|chr4 (61572577-61572702) | |
| 692-827, gnl|hg17|chr4 (186802809-186802931) | |
| 692-827, gnl|Hg17|chr4 (186802950-186802815) | |
| 692-827, gnl|loxAfr1|scaffold_6684 (44899-44786) | |
| 692-827, gnl|mm7|chr8 (44693131-44693018) | |
| 692-827, gnl|Mm7|chr8 (44692997-44693131) | |
| 692-827, gnl|monDom2|scaffold_9 (67871539-67871661) | |
| 692-827, gnl|oryCun1|scaffold_201080 (298302-298183) | |
| 692-827, gnl|panTro1|chr3 (205012587-205012709) | |
| 692-827, gnl|rheMac2|chr5 (177605150-177605272) | |
| 692-827, gnl|rn3|chr16 (49641336-49641447) | |
| 692-827, gnl|tetNig1|chr18 (8009906-8009799) | |
| 692-827, gnl|xenTro1|scaffold_99 (2187392-2187504) | |
| 835-1088, gnl|bosTau2|chr18 (15851412-15851666) | |
| 835-1088, gnl|Hg17|chr14 (49587522-49587776) | |
| 835-1088, gnl|Mm7|chr5 (31453206-31453460) | |
| 1752-1884, gnl|bosTau2|chr27 (9440388-9440522) | |
| 1752-1884, gnl|Hg17|chr4 (186797948-186797818) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| tbr (13.2593) | |
| bfe (12.8878) | |
| isp (12.6316) | |
| ste (8.11249) | |
| vin (6.9837) | |
| ldo (5.14114) | |
| ssp (3.79455) | |
| sme (3.66524) | |
| mas (1.05152) | |
| aor (0.976372) | |
| gul (0.710353) | |
| ton (0.702001) | |
| nms (0.641574) | |
| cty (0.41632) | |
| rec (0.346141) | |
| nco (0.323468) | |
| ctl (0.306138) | |
| cag (0.302389) | |
| ski (0.29347) | |
| lin (0.291206) | |
| spl (0.286369) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| hea (0.204499) | |
| eje (0.197668) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (13.2593) | |
| bfe (12.8878) | |
| isp (12.6316) | |
| ste (8.11249) | |
| vin (6.9837) | |
| ldo (5.14114) | |
| ssp (3.79455) | |
| sme (3.66524) | |
| mas (1.05152) | |
| aor (0.976372) | |
| gul (0.710353) | |
| ton (0.702001) | |
| nms (0.641574) | |
| cty (0.41632) | |
| rec (0.346141) | |
| nco (0.323468) | |
| ctl (0.306138) | |
| cag (0.302389) | |
| ski (0.29347) | |
| lin (0.291206) | |
| spl (0.286369) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| hea (0.204499) | |
| eje (0.197668) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) |