Non-Coding RNA Search

Ss1.1-risp28_d1.5

Sequence:


               
               ACAAGACAGTCTCCCAACACTGAATTTCCAAGATAATCCTTACCACTTGGTAAACCATTT
ATAGCTTTGAGAGTGTTCAGTGCTTCTTTGGTTGTTATTTATGCATGTTCATGAACTTCT
GCTGTACACGGGATAGGAGTTAACACATTCACATTTACTGTCTATTTTCTTGTGTGCCTT
ACGAGATGGCTTTTCTGACTGTATCTCAATAATCTTTCTTTCTATGCAGGTTTATAATCA
GTACAACTACTGTTTTCTAAAATAACATTACGCAAGGCTCGGAGTTTGTATTTCAATTAC
ACTGACCAAGTAACAATATATTCCGTTTTCAGGAACTGAGTATTTGACTGTTAACCCTTT
TCCCCACACACCCAGTGTGACCTAGAGCATGTGGACTTGACAGAGACACCCTCAGCCAGA
CCCCGTGTACCAACGCATATACATACACGCACCTGGTGAAAACCCCCTCTGAGTGGGGAA
GACACTGACGTGGTACTTGAGAGCCTACTTTCTTACCCTTTTAGACTCATGCATTTTGTA
TGACACCATTGCAAGAAAATTTCATCCCTGCAGATGCAGTATTTTATTACTAAAAGACAA
AAACAAAAAAAGCTTAGAGTACATTGCACTGGTTAAAGTACAGTTTCCTTCAGCACTCTG
CCTGGTATTACACTGAGAGAGTCAGCAACCATCATATGTCTACAGATGGTCCCAACCAAA
ACTCCATCCTGTGAGCCCTAATTATGTTCATTGTGTTAGAGACTAAATCAGGGGTTTGTT
CTAAAAGAACAGCATATGTTTTACCATTTCCTTTTACTGTAAAAACAGCTGATAAAGCAT
TAACATATTTTCTGTATTAACCATCATGCGCACAAGAAATACATAGTAAATAACCAGAAA
ACTCCTGGCATTGGATCATAAGAAGCTAGATGATTAGAATGTGAAAAAGATTTTACAAAT
GTAAAACTTTTATTTCTCTGTAGAAACTTTCTTCACTTTGCTGTGCAAGAAGACACTGCT
TTGCTATATTTAAAATGGCTTTTTTAAAAGAGATTTATGTATTTGGTAAATGTTTGTAGT
CAACAGTTCACACAAGCTGTACACGGTTTGATCATGTAAAACCGTTTGGCGGCACAAGCT
GGACTTTGTTGCCATCCTTGAGATGAACCTTTTAAGAAAAATAAGTTAATCTCAATTTTT
CCCTGAACGTGTTGTTTTTTTCTTCATTATACAATAAATATTATAGTGAACTTTTTATCA
AATGGTTAAGAAAACGTTAAGGTTGTTGTAAACTATTTGTATCCTGCACTCACTACAGTA
AAGACGGACTGGCTTTTCCCGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGACAGTCTCCCAACACTGAATTTCCAAGATAATCCTTACCACTTGGTAAACCATTT
ATAGCTTTGAGAGTGTTCAGTGCTTCTTTGGTTGTTATTTATGCATGTTCATGAACTTCT
GCTGTACACGGGATAGGAGTTAACACATTCACATTTACTGTCTATTTTCTTGTGTGCCTT
ACGAGATGGCTTTTCTGACTGTATCTCAATAATCTTTCTTTCTATGCAGGTTTATAATCA
GTACAACTACTGTTTTCTAAAATAACATTACGCAAGGCTCGGAGTTTGTATTTCAATTAC
ACTGACCAAGTAACAATATATTCCGTTTTCAGGAACTGAGTATTTGACTGTTAACCCTTT
TCCCCACACACCCAGTGTGACCTAGAGCATGTGGACTTGACAGAGACACCCTCAGCCAGA
CCCCGTGTACCAACGCATATACATACACGCACCTGGTGAAAACCCCCTCTGAGTGGGGAA
GACACTGACGTGGTACTTGAGAGCCTACTTTCTTACCCTTTTAGACTCATGCATTTTGTA
TGACACCATTGCAAGAAAATTTCATCCCTGCAGATGCAGTATTTTATTACTAAAAGACAA
AAACAAAAAAAGCTTAGAGTACATTGCACTGGTTAAAGTACAGTTTCCTTCAGCACTCTG
CCTGGTATTACACTGAGAGAGTCAGCAACCATCATATGTCTACAGATGGTCCCAACCAAA
ACTCCATCCTGTGAGCCCTAATTATGTTCATTGTGTTAGAGACTAAATCAGGGGTTTGTT
CTAAAAGAACAGCATATGTTTTACCATTTCCTTTTACTGTAAAAACAGCTGATAAAGCAT
TAACATATTTTCTGTATTAACCATCATGCGCACAAGAAATACATAGTAAATAACCAGAAA
ACTCCTGGCATTGGATCATAAGAAGCTAGATGATTAGAATGTGAAAAAGATTTTACAAAT
GTAAAACTTTTATTTCTCTGTAGAAACTTTCTTCACTTTGCTGTGCAAGAAGACACTGCT
TTGCTATATTTAAAATGGCTTTTTTAAAAGAGATTTATGTATTTGGTAAATGTTTGTAGT
CAACAGTTCACACAAGCTGTACACGGTTTGATCATGTAAAACCGTTTGGCGGCACAAGCT
GGACTTTGTTGCCATCCTTGAGATGAACCTTTTAAGAAAAATAAGTTAATCTCAATTTTT
CCCTGAACGTGTTGTTTTTTTCTTCATTATACAATAAATATTATAGTGAACTTTTTATCA
AATGGTTAAGAAAACGTTAAGGTTGTTGTAAACTATTTGTATCCTGCACTCACTACAGTA
AAGACGGACTGGCTTTTCCCGTGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               279-398, - strand, RNAz p=0.68085
               

               
               735-852, - strand, RNAz p=0.749275
               

               
               1125-1242, + strand, RNAz p=0.594006

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, - strand, RNAz p=0.68085
               

               
               735-852, - strand, RNAz p=0.749275
               

               
               1125-1242, + strand, RNAz p=0.594006

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BX640928, -
               

               
               3' of BC053871, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX640928, -
               

               
               3' of BC053871, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1344, gnl|bosTau2|chr21 (4706309-4707672)
               

               
               1-1344, gnl|Hg17|chr15 (98072864-98074217)
               

               
               1-1344, gnl|Mm7|chr7 (63093922-63092581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1344, gnl|bosTau2|chr21 (4706309-4707672)
               

               
               1-1344, gnl|Hg17|chr15 (98072864-98074217)
               

               
               1-1344, gnl|Mm7|chr7 (63093922-63092581)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cbe (0.956938)
               

               
               fat (0.58971)
               

               
               aor (0.585823)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               fat (0.58971)
               

               
               aor (0.585823)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	279-398, - strand, RNAz p=0.68085
	735-852, - strand, RNAz p=0.749275
	1125-1242, + strand, RNAz p=0.594006

	1-1344, gnl\|bosTau2\|chr21 (4706309-4707672)
	1-1344, gnl\|Hg17\|chr15 (98072864-98074217)
	1-1344, gnl\|Mm7\|chr7 (63093922-63092581)

	cbe (0.956938)
	fat (0.58971)
	aor (0.585823)
	fcc (0.39557)
	fbs (0.350693)
	fco (0.314416)
	tbr (0.308356)
	isp (0.300752)
	bfe (0.299715)
	cte (0.29274)
	tra (0.246184)
	cty (0.20816)
	gul (0.177588)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	liv (0.146284)
	hyp (0.142837)
	ste (0.135208)
	sug (0.127291)
	bla (0.124347)