Ss1.1-risp28_d3.5
|
AGTAGGAGTGGAGGGCGTGTTTGGCGGGGGACGCACCTTCGCTGCAGCGTTCCCGGTTTT
GATGGTTTCTCTGCGATGCTTCCGAGGGTCTCTGCTGTCATCCCTCTTCGCCCCCTTTCC
CGCCTCCCTCTGTGCTCCGGAGGCCCAGAGGCATCGGCGGCTGCCATCCTGCTGCTCGAT
TCTCTGCGTGGAACGGTCAGGACAGAAAATAATATCCAAAGATATTTTGGCACTAACAAC
TTGGTCTATAGCAAGAAAGATGAGCAGTCTGGTCCAACCTGTGAGATTTCCAAGGAGACA
GAGAGCAAAGGCAGTGTAAAGGAGAATTCGAAAAAAGACTTGCTAAATATTATTAAGGGC
ATGAAAGTTGAATTAAGCACAGTAAATGTACAAACTACAAAGCCATCCAACAAAAGACAA
CTTAAAAATTTGGAGACTGCAATTGGCAGAATTAAAAAAGCGCCAGAAGATGCTCCGCAA
AAGAGGAGTGAGTCTCTGAGCTCTGAGTTGGTGGCGGCTGTGTCTGCTGTTGCAGACTCT
CTCCCTTTTGACAGACGGATGACCAAGTCAGAGCTGCTCAGGCAGCTCCAGAAGCATGAG
GAAGACTCAAAGGCTCAGAAGGATGGAGAGAAGCCTAAAATTAGTTTCAGTAACATCATA
TCAGATATGAAAGTTGCCAGATCTGCCACAGCTAGAGTTAGTACAAGACCAGTGCATCAG
ATTCAGTTTGATGAAGGAACCGATGATTTTGCTGACCAAGAGAAGACTCTCAATCTTAAA
AAAAGTTTTAGGAAAAATATATTCAAGGGAAGGAGACTTAATATTTTTGAGCCTCAGGCA
GTTACTGAAGAGGCACCTGAAACAGAGGCAGTGCCTTCTCTTTGGGATATAGAATTTGCT
AAGCAGTTAGCAGCAGTCACTGAACGGCCCTTTCAGAATGGTTTTGAAGAGATGATTCAG
TGGACAAAAGAGGGGAAGTTGTGGGAGTTCCCAATTAACAACGAGGCAGGTTTTGATGAT
GACGGTTCAGAATTTCATGAACATATATTTCTGGATAAATACCTGCAGGATTTTCCAAAA
CAGGGACCAATTCGCCACTTCATGGAGCTGGTGACCTGTGGCCTTTCCAAAAACCCATAT
CTGAGTGTTAAACAGAAAGTTGAACACATAGAGTGGTTTAGAAATTATTTTAATGAAAAA
CGAGTCATTCTGAAAGAAAGTGGCATACAGCTCAATTGAAGACCATAGAAATTTTTACTA
CAGGCTATTGGAGATTCATGTTATAACTAAATAAAATAATTTTACTACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTAGGAGTGGAGGGCGTGTTTGGCGGGGGACGCACCTTCGCTGCAGCGTTCCCGGTTTT
GATGGTTTCTCTGCGATGCTTCCGAGGGTCTCTGCTGTCATCCCTCTTCGCCCCCTTTCC
CGCCTCCCTCTGTGCTCCGGAGGCCCAGAGGCATCGGCGGCTGCCATCCTGCTGCTCGAT
TCTCTGCGTGGAACGGTCAGGACAGAAAATAATATCCAAAGATATTTTGGCACTAACAAC
TTGGTCTATAGCAAGAAAGATGAGCAGTCTGGTCCAACCTGTGAGATTTCCAAGGAGACA
GAGAGCAAAGGCAGTGTAAAGGAGAATTCGAAAAAAGACTTGCTAAATATTATTAAGGGC
ATGAAAGTTGAATTAAGCACAGTAAATGTACAAACTACAAAGCCATCCAACAAAAGACAA
CTTAAAAATTTGGAGACTGCAATTGGCAGAATTAAAAAAGCGCCAGAAGATGCTCCGCAA
AAGAGGAGTGAGTCTCTGAGCTCTGAGTTGGTGGCGGCTGTGTCTGCTGTTGCAGACTCT
CTCCCTTTTGACAGACGGATGACCAAGTCAGAGCTGCTCAGGCAGCTCCAGAAGCATGAG
GAAGACTCAAAGGCTCAGAAGGATGGAGAGAAGCCTAAAATTAGTTTCAGTAACATCATA
TCAGATATGAAAGTTGCCAGATCTGCCACAGCTAGAGTTAGTACAAGACCAGTGCATCAG
ATTCAGTTTGATGAAGGAACCGATGATTTTGCTGACCAAGAGAAGACTCTCAATCTTAAA
AAAAGTTTTAGGAAAAATATATTCAAGGGAAGGAGACTTAATATTTTTGAGCCTCAGGCA
GTTACTGAAGAGGCACCTGAAACAGAGGCAGTGCCTTCTCTTTGGGATATAGAATTTGCT
AAGCAGTTAGCAGCAGTCACTGAACGGCCCTTTCAGAATGGTTTTGAAGAGATGATTCAG
TGGACAAAAGAGGGGAAGTTGTGGGAGTTCCCAATTAACAACGAGGCAGGTTTTGATGAT
GACGGTTCAGAATTTCATGAACATATATTTCTGGATAAATACCTGCAGGATTTTCCAAAA
CAGGGACCAATTCGCCACTTCATGGAGCTGGTGACCTGTGGCCTTTCCAAAAACCCATAT
CTGAGTGTTAAACAGAAAGTTGAACACATAGAGTGGTTTAGAAATTATTTTAATGAAAAA
CGAGTCATTCTGAAAGAAAGTGGCATACAGCTCAATTGAAGACCATAGAAATTTTTACTA
CAGGCTATTGGAGATTCATGTTATAACTAAATAAAATAATTTTACTACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
10-201, gnl|bosTau2|chr12 (11666671-11666861) |
|
10-201, gnl|Hg17|chr13 (52089629-52089819) |
| |
|
217-486, gnl|bosTau2|chr12 (11670299-11670568) |
|
217-486, gnl|canFam2|chr25 (3511442-3511054) |
|
217-486, gnl|dasNov1|scaffold_78852 (5877-5466) |
|
217-486, gnl|hg17|chr13 (40238775-40239174) |
|
217-486, gnl|Hg17|chr13 (52094141-52094401) |
|
217-486, gnl|loxAfr1|scaffold_25135 (45883-46290) |
|
217-486, gnl|mm7|chr8 (21198031-21197622) |
|
217-486, gnl|Mm7|chr8 (21197641-21197913) |
|
217-486, gnl|monDom2|scaffold_15 (53609477-53609866) |
|
217-486, gnl|panTro1|chr14 (39946996-39947395) |
|
217-486, gnl|rheMac2|chr17 (19826700-19827095) |
|
217-486, gnl|rn3|chr16 (74263508-74263923) |
| |
|
491-682, gnl|bosTau2|chr12 (11674466-11674655) |
|
491-682, gnl|Hg17|chr13 (52099579-52099750) |
|
491-682, gnl|Mm7|chr8 (21202641-21202861) |
| |
|
1008-1310, gnl|bosTau2|chr12 (11691462-11691764) |
|
1008-1310, gnl|Hg17|chr13 (40201739-40201439) |
|
1008-1310, gnl|Mm7|chr8 (21212088-21212389) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
10-201, gnl|bosTau2|chr12 (11666671-11666861) |
|
10-201, gnl|Hg17|chr13 (52089629-52089819) |
| |
|
217-486, gnl|bosTau2|chr12 (11670299-11670568) |
|
217-486, gnl|canFam2|chr25 (3511442-3511054) |
|
217-486, gnl|dasNov1|scaffold_78852 (5877-5466) |
|
217-486, gnl|hg17|chr13 (40238775-40239174) |
|
217-486, gnl|Hg17|chr13 (52094141-52094401) |
|
217-486, gnl|loxAfr1|scaffold_25135 (45883-46290) |
|
217-486, gnl|mm7|chr8 (21198031-21197622) |
|
217-486, gnl|Mm7|chr8 (21197641-21197913) |
|
217-486, gnl|monDom2|scaffold_15 (53609477-53609866) |
|
217-486, gnl|panTro1|chr14 (39946996-39947395) |
|
217-486, gnl|rheMac2|chr17 (19826700-19827095) |
|
217-486, gnl|rn3|chr16 (74263508-74263923) |
| |
|
491-682, gnl|bosTau2|chr12 (11674466-11674655) |
|
491-682, gnl|Hg17|chr13 (52099579-52099750) |
|
491-682, gnl|Mm7|chr8 (21202641-21202861) |
| |
|
1008-1310, gnl|bosTau2|chr12 (11691462-11691764) |
|
1008-1310, gnl|Hg17|chr13 (40201739-40201439) |
|
1008-1310, gnl|Mm7|chr8 (21212088-21212389) |
|
cbr (1.15178) |
|
ret (0.7724) |
|
lin (0.728014) |
|
cty (0.5204) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
ski (0.440205) |
|
tes (0.415628) |
|
sto (0.359648) |
|
vin (0.332557) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ova (0.258264) |
|
thg (0.253582) |
|
bla (0.248694) |
|
tra (0.246184) |
|
hea (0.204499) |
|
aor (0.195274) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
cut (0.169924) |
|
fco (0.157208) |
|
isp (0.150376) |
|
fat (0.147427) |
|
liv (0.146284) |
|
pty (0.142714) |
|
csk (0.140746) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
med (0.116252) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
cbr (1.15178) |
|
ret (0.7724) |
|
lin (0.728014) |
|
cty (0.5204) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
ski (0.440205) |
|
tes (0.415628) |
|
sto (0.359648) |
|
vin (0.332557) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ova (0.258264) |
|
thg (0.253582) |
|
bla (0.248694) |
|
tra (0.246184) |
|
hea (0.204499) |
|
aor (0.195274) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
cut (0.169924) |
|
fco (0.157208) |
|
isp (0.150376) |
|
fat (0.147427) |
|
liv (0.146284) |
|
pty (0.142714) |
|
csk (0.140746) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
med (0.116252) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
ldo (0.0970026) |
