Non-Coding RNA Search

Ss1.1-risp31_c1.5

Sequence:


               
               GTTGAAATCATCTTATTGTACAGTTAAGACAGTGGTGGTTGGAAAGAATGTGAAGACTGA
GGAAGTTATGTCCCAATCAGAGGAGAGTAAATTGTGTGGTAAATGGAGAAAGACATTGGA
CAAGGTTGACTTATACCCCTGGCTATGAAAAAAGCCAGTGGGAAATGGAAAGAACATGAA
CATTTAAGCTGCTCTCAAGACAGACATCCCGGTGGAAGAGTTCCTACCCGAGGTCTGGTG
TGACTCAGTTACGGAATGCAGTGAGCATGGCCAGTGGGATTGTGAATCCAGCCCAACAGC
TCCGAGAATCACTTTGTCAGTGTGTGGCACATGGAGAAAACGAAGACAAGGACTCTGTGA
GACTAGCCTACGTCCCTTTAATTGCCAGCATTTGTAAGTGATTGTGCAATCTTGTGTAAT
GGTCTTTTATTTTGACTCTCTTGAAAAAAAGAAATGTTGTGTTGTTGTTGGTTTGTTTGT
TTTTTTTTTCCAGTAAAAGTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAATCATCTTATTGTACAGTTAAGACAGTGGTGGTTGGAAAGAATGTGAAGACTGA
GGAAGTTATGTCCCAATCAGAGGAGAGTAAATTGTGTGGTAAATGGAGAAAGACATTGGA
CAAGGTTGACTTATACCCCTGGCTATGAAAAAAGCCAGTGGGAAATGGAAAGAACATGAA
CATTTAAGCTGCTCTCAAGACAGACATCCCGGTGGAAGAGTTCCTACCCGAGGTCTGGTG
TGACTCAGTTACGGAATGCAGTGAGCATGGCCAGTGGGATTGTGAATCCAGCCCAACAGC
TCCGAGAATCACTTTGTCAGTGTGTGGCACATGGAGAAAACGAAGACAAGGACTCTGTGA
GACTAGCCTACGTCCCTTTAATTGCCAGCATTTGTAAGTGATTGTGCAATCTTGTGTAAT
GGTCTTTTATTTTGACTCTCTTGAAAAAAAGAAATGTTGTGTTGTTGTTGGTTTGTTTGT
TTTTTTTTTCCAGTAAAAGTAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-504, - strand, RNAz p=0.689096

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-504, - strand, RNAz p=0.689096

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-504, gnl|bosTau2|chr6 (9272085-9271590)
               

               
               3-504, gnl|Hg17|chr4 (100915372-100914874)
               

               
               3-504, gnl|Mm7|chr3 (137889281-137889734)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-504, gnl|bosTau2|chr6 (9272085-9271590)
               

               
               3-504, gnl|Hg17|chr4 (100915372-100914874)
               

               
               3-504, gnl|Mm7|chr3 (137889281-137889734)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               bfe (0.449573)
               

               
               nms (0.427716)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               nms (0.427716)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               eru (0.120048)

	3-504, gnl\|bosTau2\|chr6 (9272085-9271590)
	3-504, gnl\|Hg17\|chr4 (100915372-100914874)
	3-504, gnl\|Mm7\|chr3 (137889281-137889734)

	bfe (0.449573)
	nms (0.427716)
	vin (0.332557)
	isp (0.300752)
	mas (0.210305)
	cmu (0.186393)
	eru (0.120048)