Non-Coding RNA Search

Ss1.1-risp32_l23.5

Sequence:


               
               GCTGCAGTCACTCTTGCTCATAGATAAAATAAGAAGTTATCTGTAATATGTAGAGTATAT
GCTTTTAAAAGAAATTCCTTCCTGTTTTCATTCTCTTATTATGGAATAGAATGCAGAAAC
TCTCGGGTCAAAATGGCGAGCAGGCCTGCTGTTGCAGCATCAAGCAAGTGGCTGGAGGGT
ATACGAAAATGGTATTATAATGCCGCCGGGTTTAATAAACTGGGCTTAATGCGAGATGAT
ACAATATATGAGGATGACGATGTAAAAGAAGCCATAAGAAGGCTTCCTGAGAACCTTTAT
AACGACAGGGTGTTTCGCATTAAGAGAGCACTGGACCTGACTATGAGACAGCAGATCTTG
CCTAAAGAGCAGTGGACAAAATATGAGGAGGATAAATTCTACCTTGAACCATATCTGAAA
GAGGTTATCCGGGAAAGAAAAGAAAGAGAAGAATGGGCAAAGAAATAATCGTATAGTCTA
AATCTGTGGATGCAGCAGTCGTCAAACTATTTTTATGAACTTGGTTAAACCCGAAATGTA
CAATGTAGACCTATCTGAGCTGTAAATGTATTACTTTAAATAAATATCTATTATAAATAT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCAGTCACTCTTGCTCATAGATAAAATAAGAAGTTATCTGTAATATGTAGAGTATAT
GCTTTTAAAAGAAATTCCTTCCTGTTTTCATTCTCTTATTATGGAATAGAATGCAGAAAC
TCTCGGGTCAAAATGGCGAGCAGGCCTGCTGTTGCAGCATCAAGCAAGTGGCTGGAGGGT
ATACGAAAATGGTATTATAATGCCGCCGGGTTTAATAAACTGGGCTTAATGCGAGATGAT
ACAATATATGAGGATGACGATGTAAAAGAAGCCATAAGAAGGCTTCCTGAGAACCTTTAT
AACGACAGGGTGTTTCGCATTAAGAGAGCACTGGACCTGACTATGAGACAGCAGATCTTG
CCTAAAGAGCAGTGGACAAAATATGAGGAGGATAAATTCTACCTTGAACCATATCTGAAA
GAGGTTATCCGGGAAAGAAAAGAAAGAGAAGAATGGGCAAAGAAATAATCGTATAGTCTA
AATCTGTGGATGCAGCAGTCGTCAAACTATTTTTATGAACTTGGTTAAACCCGAAATGTA
CAATGTAGACCTATCTGAGCTGTAAATGTATTACTTTAAATAAATATCTATTATAAATAT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               UCR6_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               UCR6_BOVIN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               121-594, gnl|bosTau2|chr10 (30896284-30896752)
               

               
               121-594, gnl|Hg17|chr5 (159617826-159618277)
               

               
               121-594, gnl|Mm7|chr1 (170902132-170901657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-594, gnl|bosTau2|chr10 (30896284-30896752)
               

               
               121-594, gnl|Hg17|chr5 (159617826-159618277)
               

               
               121-594, gnl|Mm7|chr1 (170902132-170901657)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

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               vin (3.32557)
               

               
               bfe (3.29687)
               

               
               sme (2.44349)
               

               
               cbe (2.15311)
               

               
               isp (2.10526)
               

               
               hlv (1.81033)
               

               
               sto (1.79824)
               

               
               cte (1.75644)
               

               
               rec (1.21149)
               

               
               cmu (1.11836)
               

               
               aor (0.976372)
               

               
               ssp (0.948638)
               

               
               mga (0.801025)
               

               
               spc (0.680195)
               

               
               kid (0.648677)
               

               
               mas (0.630915)
               

               
               fco (0.628832)
               

               
               col (0.585023)
               

               
               che (0.545256)
               

               
               duo (0.518403)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               lyg (0.399308)
               

               
               eje (0.395335)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               jej (0.296765)
               

               
               ski (0.29347)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (3.32557)
               

               
               bfe (3.29687)
               

               
               sme (2.44349)
               

               
               cbe (2.15311)
               

               
               isp (2.10526)
               

               
               hlv (1.81033)
               

               
               sto (1.79824)
               

               
               cte (1.75644)
               

               
               rec (1.21149)
               

               
               cmu (1.11836)
               

               
               aor (0.976372)
               

               
               ssp (0.948638)
               

               
               mga (0.801025)
               

               
               spc (0.680195)
               

               
               kid (0.648677)
               

               
               mas (0.630915)
               

               
               fco (0.628832)
               

               
               col (0.585023)
               

               
               che (0.545256)
               

               
               duo (0.518403)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               lyg (0.399308)
               

               
               eje (0.395335)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               jej (0.296765)
               

               
               ski (0.29347)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	121-594, gnl\|bosTau2\|chr10 (30896284-30896752)
	121-594, gnl\|Hg17\|chr5 (159617826-159618277)
	121-594, gnl\|Mm7\|chr1 (170902132-170901657)

	vin (3.32557)
	bfe (3.29687)
	sme (2.44349)
	cbe (2.15311)
	isp (2.10526)
	hlv (1.81033)
	sto (1.79824)
	cte (1.75644)
	rec (1.21149)
	cmu (1.11836)
	aor (0.976372)
	ssp (0.948638)
	mga (0.801025)
	spc (0.680195)
	kid (0.648677)
	mas (0.630915)
	fco (0.628832)
	col (0.585023)
	che (0.545256)
	duo (0.518403)
	ova (0.516529)
	pro (0.512033)
	fat (0.442282)
	nms (0.427716)
	amn (0.417711)
	hea (0.408998)
	lyg (0.399308)
	eje (0.395335)
	nje (0.33184)
	cje (0.330469)
	jej (0.296765)
	ski (0.29347)
	pty (0.285429)
	lnt (0.284616)
	csk (0.281492)
	fce (0.271592)
	ste (0.270416)
	thg (0.253582)
	ebs (0.236602)
	tes (0.207814)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	spl (0.143184)
	cst (0.140036)
	nmm (0.132802)
	ute (0.132784)
	cbr (0.127975)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	nbm (0.0993246)
	ldo (0.0970026)