Non-Coding RNA Search

Ss1.1-risp33_e12.5

Sequence:


               
               CGGTGTATTAGAGTGGATTGAAATGCCAGTCATGCCTGATATTTCAGCCCATTGACTTGC
TGGATGAAGGACTAGAGTACAGCAGCTGTGCTAACGCGACCCGTCCATGTGGGACAGACT
GTTCCCGGGCTGCCCTTGTGGTACCAGACAAAATTTGAATTCTTTTTTCTTGAATTGTGT
ATGACCTTGGTGCTGCGTGCATGCTGTTGACTTTTAGGACTTCGATCTTTCAAGGTTTTT
TTTTCCAGCATTAATACTGATTTATAAAAATTTGAAAGTCTTTAATGAACCCGGACACTA
AGATTTAAACTTGAAAATTCGTTGTTCAATTAAAGAAAGCCACAATGCTCTGTATGTTAT
CTGTGTGTGTGCATGCACTCAGGTGCCTTCTGTTTCATGAGCAAATACATTTTACTGTAC
ATGTTTTCCGTTTCTCGCTAAATCATTGTATAAAGTATTGTAGGTCAGAATTATACTTTA
GAACTGTTTATGAGGGCTTGTTTCTGTTGCACATTTCTTGAAGCATTTTTAAAATAACAT
GTAACCTGTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGTATTAGAGTGGATTGAAATGCCAGTCATGCCTGATATTTCAGCCCATTGACTTGC
TGGATGAAGGACTAGAGTACAGCAGCTGTGCTAACGCGACCCGTCCATGTGGGACAGACT
GTTCCCGGGCTGCCCTTGTGGTACCAGACAAAATTTGAATTCTTTTTTCTTGAATTGTGT
ATGACCTTGGTGCTGCGTGCATGCTGTTGACTTTTAGGACTTCGATCTTTCAAGGTTTTT
TTTTCCAGCATTAATACTGATTTATAAAAATTTGAAAGTCTTTAATGAACCCGGACACTA
AGATTTAAACTTGAAAATTCGTTGTTCAATTAAAGAAAGCCACAATGCTCTGTATGTTAT
CTGTGTGTGTGCATGCACTCAGGTGCCTTCTGTTTCATGAGCAAATACATTTTACTGTAC
ATGTTTTCCGTTTCTCGCTAAATCATTGTATAAAGTATTGTAGGTCAGAATTATACTTTA
GAACTGTTTATGAGGGCTTGTTTCTGTTGCACATTTCTTGAAGCATTTTTAAAATAACAT
GTAACCTGTAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-113, + strand, RNAz p=0.695893

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-113, + strand, RNAz p=0.695893

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB067800, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB067800, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-552, gnl|bosTau2|chr9 (61804549-61804004)
               

               
               9-552, gnl|Hg17|chr6 (163956107-163956652)
               

               
               9-552, gnl|Mm7|chr17 (8934200-8933635)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-552, gnl|bosTau2|chr9 (61804549-61804004)
               

               
               9-552, gnl|Hg17|chr6 (163956107-163956652)
               

               
               9-552, gnl|Mm7|chr17 (8934200-8933635)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               isp (0.150376)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               spc (0.113366)

	9-552, gnl\|bosTau2\|chr9 (61804549-61804004)
	9-552, gnl\|Hg17\|chr6 (163956107-163956652)
	9-552, gnl\|Mm7\|chr17 (8934200-8933635)