Non-Coding RNA Search

Ss1.1-risp33_n18.5

Sequence:


               
               GGTAGAAAATTCTCATTACCTAAGCAAGGGAAAAAAGCATGCAAACAAATCACAAATCTA
GCGTGATAAGTAGAACAAGGTAAATATACATAAGATGTAGAGGCAGCGTAGGGAGTATAT
ACATATTCCTCTGTACCTATTTTAAATTCTAGAAGTGGGAAAATGTGTATATGGTAGAGG
GAGGTAGCTTTATGGTAAATTTTTAAAAAACCAAAACCTCCTAACTATTTACCTGTTTAC
TACTGAATCAAATATGTTCCCTTGTAATATTAGTTGCTATAAACTGTAGTCAAATGAATT
ATGACATGAAAGATTAATAAGGCAAGATCTTATATTTTCTTTTCATAGATAAATTATTTT
TCAATGTCTTACAACATCACCACCAAACTTCTCTTTAGCAATTGAAATATTTGTCATTGA
ACAAGGAAGAACACCTAAATGTCGCAACTAATCATTAAAAACCAAATACTATAGCCTGGA
ATATATTCAAAATCTCTTTGAAATGTAGACATGGGAGAAATGAGTTTTCTTAAGGATACT
GATATTTCTTAGCATAATTAAGTTTTGTGGAATATTATCTAGTATCAACAAAGTTAAGGT
TTTCCTGGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGAAAATTCTCATTACCTAAGCAAGGGAAAAAAGCATGCAAACAAATCACAAATCTA
GCGTGATAAGTAGAACAAGGTAAATATACATAAGATGTAGAGGCAGCGTAGGGAGTATAT
ACATATTCCTCTGTACCTATTTTAAATTCTAGAAGTGGGAAAATGTGTATATGGTAGAGG
GAGGTAGCTTTATGGTAAATTTTTAAAAAACCAAAACCTCCTAACTATTTACCTGTTTAC
TACTGAATCAAATATGTTCCCTTGTAATATTAGTTGCTATAAACTGTAGTCAAATGAATT
ATGACATGAAAGATTAATAAGGCAAGATCTTATATTTTCTTTTCATAGATAAATTATTTT
TCAATGTCTTACAACATCACCACCAAACTTCTCTTTAGCAATTGAAATATTTGTCATTGA
ACAAGGAAGAACACCTAAATGTCGCAACTAATCATTAAAAACCAAATACTATAGCCTGGA
ATATATTCAAAATCTCTTTGAAATGTAGACATGGGAGAAATGAGTTTTCTTAAGGATACT
GATATTTCTTAGCATAATTAAGTTTTGTGGAATATTATCTAGTATCAACAAAGTTAAGGT
TTTCCTGGTGAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-375, gnl|bosTau2|chr5 (30588040-30588414)
               

               
               6-375, gnl|Hg17|chr12 (64131989-64132372)
               

               
               6-375, gnl|Mm7|chr10 (120189405-120189058)
               


               
               412-612, gnl|bosTau2|chr5 (30588731-30588933)
               

               
               412-612, gnl|Hg17|chr12 (64132412-64132609)
               

               
               412-612, gnl|Mm7|chr10 (120189013-120188846)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-375, gnl|bosTau2|chr5 (30588040-30588414)
               

               
               6-375, gnl|Hg17|chr12 (64131989-64132372)
               

               
               6-375, gnl|Mm7|chr10 (120189405-120189058)
               


               
               412-612, gnl|bosTau2|chr5 (30588731-30588933)
               

               
               412-612, gnl|Hg17|chr12 (64132412-64132609)
               

               
               412-612, gnl|Mm7|chr10 (120189013-120188846)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               isp (0.150376)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	6-375, gnl\|bosTau2\|chr5 (30588040-30588414)
	6-375, gnl\|Hg17\|chr12 (64131989-64132372)
	6-375, gnl\|Mm7\|chr10 (120189405-120189058)

	412-612, gnl\|bosTau2\|chr5 (30588731-30588933)
	412-612, gnl\|Hg17\|chr12 (64132412-64132609)
	412-612, gnl\|Mm7\|chr10 (120189013-120188846)