Non-Coding RNA Search

Ss1.1-risp33_o6.5

Sequence:


               
               TTCTCAGCGCTGGGTGACATTGAGCACAGAGCGCAGCCGCACCACCGCCGGCCTGGGCCT
CTCTGCTGGTCCGCGGAGTGGGCGGCCATGGGGAGCCTCCGCAGCCTGCGCCTGGCGGCT
GGAAATTATTTTAGGTTGTGTGAAAGAAATGCTTCCTCATCTCTAAAGCTTACCAGAAAC
TCTGATTTGAAGAGAATAAATGGATTTTGCACCAAACCACAGGAAAGTCCAAAAGCTCCA
ACCTACACTTATAGCCACAGAGTGCCATTGCATAAGCCTACAGACTGGGAGAAGAAGATC
CTGATATGGTCAGGTCGCTTCAAAAAGGAAGATGAAATCCCAGAGACTATATCGTTTGAG
ATGCTCGATGCTGCAAAGAACAAGATTCGAGTGAAGATCAGCTATGTAATGATTGCACTG
ACAGTGGCAGGATGCATCTTGATGGTTATTGAGGGCAAGAAGGCTGCCAAAAGAAACGAG
TCATTAACAAGCATGAACCTAGAAAAGAAAGCTCGTCTGCGAGAGGAAGCTGCTATGAAG
GCCAAGACAGAGTAGCAGAGATACCCATGTTGGCTGGATTTTCAAACTCTAGAAACAGTT
TTGCAGCAACAAGCCTATATTACAAAGAATGTGGTATAAGGTTCTCTATTTCTGCTCTAG
AGCTACAAATAAATTTTCTTAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCAGCGCTGGGTGACATTGAGCACAGAGCGCAGCCGCACCACCGCCGGCCTGGGCCT
CTCTGCTGGTCCGCGGAGTGGGCGGCCATGGGGAGCCTCCGCAGCCTGCGCCTGGCGGCT
GGAAATTATTTTAGGTTGTGTGAAAGAAATGCTTCCTCATCTCTAAAGCTTACCAGAAAC
TCTGATTTGAAGAGAATAAATGGATTTTGCACCAAACCACAGGAAAGTCCAAAAGCTCCA
ACCTACACTTATAGCCACAGAGTGCCATTGCATAAGCCTACAGACTGGGAGAAGAAGATC
CTGATATGGTCAGGTCGCTTCAAAAAGGAAGATGAAATCCCAGAGACTATATCGTTTGAG
ATGCTCGATGCTGCAAAGAACAAGATTCGAGTGAAGATCAGCTATGTAATGATTGCACTG
ACAGTGGCAGGATGCATCTTGATGGTTATTGAGGGCAAGAAGGCTGCCAAAAGAAACGAG
TCATTAACAAGCATGAACCTAGAAAAGAAAGCTCGTCTGCGAGAGGAAGCTGCTATGAAG
GCCAAGACAGAGTAGCAGAGATACCCATGTTGGCTGGATTTTCAAACTCTAGAAACAGTT
TTGCAGCAACAAGCCTATATTACAAAGAATGTGGTATAAGGTTCTCTATTTCTGCTCTAG
AGCTACAAATAAATTTTCTTAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57109568|ref|XP_535760.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109568|ref|XP_535760.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-122, gnl|bosTau2|chr1 (34759687-34759802)
               

               
               1-122, gnl|Hg17|chr3 (123585719-123585837)
               

               
               1-122, gnl|Mm7|chr16 (35750358-35750248)
               


               
               245-355, gnl|bosTau2|chr1 (34695679-34695569)
               

               
               245-355, gnl|Hg17|chr3 (123605795-123605902)
               

               
               245-355, gnl|Mm7|chr16 (35724246-35724136)
               


               
               461-687, gnl|bosTau2|chr1 (34679498-34679274)
               

               
               461-687, gnl|Hg17|chr3 (123611274-123611536)
               

               
               461-687, gnl|Mm7|chr16 (35718304-35718057)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr1 (34759687-34759802)
               

               
               1-122, gnl|Hg17|chr3 (123585719-123585837)
               

               
               1-122, gnl|Mm7|chr16 (35750358-35750248)
               


               
               245-355, gnl|bosTau2|chr1 (34695679-34695569)
               

               
               245-355, gnl|Hg17|chr3 (123605795-123605902)
               

               
               245-355, gnl|Mm7|chr16 (35724246-35724136)
               


               
               461-687, gnl|bosTau2|chr1 (34679498-34679274)
               

               
               461-687, gnl|Hg17|chr3 (123611274-123611536)
               

               
               461-687, gnl|Mm7|chr16 (35718304-35718057)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

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               sme (2.44349)
               

               
               isp (2.10526)
               

               
               hea (1.63599)
               

               
               ste (1.6225)
               

               
               sin (1.57453)
               

               
               ldo (1.35804)
               

               
               vin (1.33023)
               

               
               ssp (1.21968)
               

               
               bfe (1.19886)
               

               
               lin (1.16482)
               

               
               ova (1.16219)
               

               
               hlv (0.974795)
               

               
               mgp (0.922722)
               

               
               cte (0.87822)
               

               
               csk (0.844476)
               

               
               cbe (0.717703)
               

               
               duo (0.691204)
               

               
               che (0.68157)
               

               
               nms (0.641574)
               

               
               ski (0.586941)
               

               
               col (0.585023)
               

               
               sag (0.548145)
               

               
               sto (0.539471)
               

               
               ill (0.526778)
               

               
               rec (0.519211)
               

               
               bla (0.497389)
               

               
               nco (0.485201)
               

               
               lun (0.451467)
               

               
               jej (0.395687)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (2.44349)
               

               
               isp (2.10526)
               

               
               hea (1.63599)
               

               
               ste (1.6225)
               

               
               sin (1.57453)
               

               
               ldo (1.35804)
               

               
               vin (1.33023)
               

               
               ssp (1.21968)
               

               
               bfe (1.19886)
               

               
               lin (1.16482)
               

               
               ova (1.16219)
               

               
               hlv (0.974795)
               

               
               mgp (0.922722)
               

               
               cte (0.87822)
               

               
               csk (0.844476)
               

               
               cbe (0.717703)
               

               
               duo (0.691204)
               

               
               che (0.68157)
               

               
               nms (0.641574)
               

               
               ski (0.586941)
               

               
               col (0.585023)
               

               
               sag (0.548145)
               

               
               sto (0.539471)
               

               
               ill (0.526778)
               

               
               rec (0.519211)
               

               
               bla (0.497389)
               

               
               nco (0.485201)
               

               
               lun (0.451467)
               

               
               jej (0.395687)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	1-122, gnl\|bosTau2\|chr1 (34759687-34759802)
	1-122, gnl\|Hg17\|chr3 (123585719-123585837)
	1-122, gnl\|Mm7\|chr16 (35750358-35750248)

	245-355, gnl\|bosTau2\|chr1 (34695679-34695569)
	245-355, gnl\|Hg17\|chr3 (123605795-123605902)
	245-355, gnl\|Mm7\|chr16 (35724246-35724136)

	461-687, gnl\|bosTau2\|chr1 (34679498-34679274)
	461-687, gnl\|Hg17\|chr3 (123611274-123611536)
	461-687, gnl\|Mm7\|chr16 (35718304-35718057)

	sme (2.44349)
	isp (2.10526)
	hea (1.63599)
	ste (1.6225)
	sin (1.57453)
	ldo (1.35804)
	vin (1.33023)
	ssp (1.21968)
	bfe (1.19886)
	lin (1.16482)
	ova (1.16219)
	hlv (0.974795)
	mgp (0.922722)
	cte (0.87822)
	csk (0.844476)
	cbe (0.717703)
	duo (0.691204)
	che (0.68157)
	nms (0.641574)
	ski (0.586941)
	col (0.585023)
	sag (0.548145)
	sto (0.539471)
	ill (0.526778)
	rec (0.519211)
	bla (0.497389)
	nco (0.485201)
	lun (0.451467)
	jej (0.395687)
	sug (0.381874)
	thg (0.380373)
	cki (0.330469)
	mga (0.32041)
	fco (0.314416)
	tbr (0.308356)
	fat (0.294855)
	lnt (0.284616)
	cst (0.280073)
	pla (0.267344)
	eru (0.240096)
	pgl (0.236967)
	spc (0.226732)
	mas (0.210305)
	tes (0.207814)
	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	nje (0.16592)
	hyp (0.142837)
	lyg (0.133103)
	cov (0.132153)
	kid (0.129735)
	ret (0.128733)
	cly (0.120642)
	eje (0.0988338)