Non-Coding RNA Search

Ss1.1-risp34_b13.5

Sequence:


               
               CCCTCCTCCGCCTCCACCCCCTCCTCCCCCAGAGAAGAAGCTCATCACCAGGAACATTGC
CGAAGTCATCAAACAGCAGGAGAGCGCCCAGCGGGCACTGCAGAATGGACAGAAAAAGAA
AAAAGGGAAAAAGGCTAAAAAACAGCCAAACAATATCCTAAAGGAAATTAAAAATTCCCT
GAGGTCCGTGCAAGAGAAGAAAACGGAAGACAGTTCCCGACCTTCCACCCCGCAGAGATC
GGCTCATGAGAACCTCATGGAAGCTATTCGGGGAAGCAGCATACGACAGCTAAGACGGGT
GGAAGTTCCAGAAGCTCTGCGATAAAAACATGATCTTTAGAAGAGGATGCAGAAATATTC
AGTGGTATTAGATGAAATGCATTGTGAGATGTTTCTAAAATACTTTCTTCAATTTGAAAT
GTTCTCTGACTCTAAAAATAGCCTCGCCCATTAATTCCAAAGAGAATTTTAAGAAACAGT
CAGCATGTTTCTTCTGTAAATATGAAAATAAACTTCTTTTTTATGTCATGAGATTTGTAC
TGACAAGAAGCAGTTTATTTAAAGATGCTCTGGACGGTTGGTAACTCTGAGCTACAATGA
ATTAACGAAATATGCTGTTATTTTTGTAATCCCAATAAATTTGGATTGAATTTTTTTGGG
TTTTTTTTAAAACACTAATTTTTTTTTGTAAGTTGATACATCTGTCAGGTGTGTATGTAA
CATTGCTAAATATTAAAAATATTATATTCTCACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCCGCCTCCACCCCCTCCTCCCCCAGAGAAGAAGCTCATCACCAGGAACATTGC
CGAAGTCATCAAACAGCAGGAGAGCGCCCAGCGGGCACTGCAGAATGGACAGAAAAAGAA
AAAAGGGAAAAAGGCTAAAAAACAGCCAAACAATATCCTAAAGGAAATTAAAAATTCCCT
GAGGTCCGTGCAAGAGAAGAAAACGGAAGACAGTTCCCGACCTTCCACCCCGCAGAGATC
GGCTCATGAGAACCTCATGGAAGCTATTCGGGGAAGCAGCATACGACAGCTAAGACGGGT
GGAAGTTCCAGAAGCTCTGCGATAAAAACATGATCTTTAGAAGAGGATGCAGAAATATTC
AGTGGTATTAGATGAAATGCATTGTGAGATGTTTCTAAAATACTTTCTTCAATTTGAAAT
GTTCTCTGACTCTAAAAATAGCCTCGCCCATTAATTCCAAAGAGAATTTTAAGAAACAGT
CAGCATGTTTCTTCTGTAAATATGAAAATAAACTTCTTTTTTATGTCATGAGATTTGTAC
TGACAAGAAGCAGTTTATTTAAAGATGCTCTGGACGGTTGGTAACTCTGAGCTACAATGA
ATTAACGAAATATGCTGTTATTTTTGTAATCCCAATAAATTTGGATTGAATTTTTTTGGG
TTTTTTTTAAAACACTAATTTTTTTTTGTAAGTTGATACATCTGTCAGGTGTGTATGTAA
CATTGCTAAATATTAAAAATATTATATTCTCACCCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-300, gnl|bosTau2|chr24 (7259742-7260041)
               

               
               1-300, gnl|Hg17|chr7 (122896911-122897210)
               

               
               1-300, gnl|Mm7|chr6 (24547622-24547921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-300, gnl|bosTau2|chr24 (7259742-7260041)
               

               
               1-300, gnl|Hg17|chr7 (122896911-122897210)
               

               
               1-300, gnl|Mm7|chr6 (24547622-24547921)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               vin (5.65348)
               

               
               isp (4.51128)
               

               
               ssp (1.76176)
               

               
               ldo (1.64904)
               

               
               che (0.954198)
               

               
               ste (0.946458)
               

               
               bfe (0.899146)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               cki (0.165235)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (5.65348)
               

               
               isp (4.51128)
               

               
               ssp (1.76176)
               

               
               ldo (1.64904)
               

               
               che (0.954198)
               

               
               ste (0.946458)
               

               
               bfe (0.899146)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               cki (0.165235)

	1-300, gnl\|bosTau2\|chr24 (7259742-7260041)
	1-300, gnl\|Hg17\|chr7 (122896911-122897210)
	1-300, gnl\|Mm7\|chr6 (24547622-24547921)

	vin (5.65348)
	isp (4.51128)
	ssp (1.76176)
	ldo (1.64904)
	che (0.954198)
	ste (0.946458)
	bfe (0.899146)
	hea (0.613497)
	sme (0.610874)
	mas (0.42061)
	hlv (0.417769)
	cki (0.165235)